RNA id: XR_004580256.1


Basic Information

Item Value
RNA id XR_004580256.1
length 1131
RNA type misc_RNA
GC content 0.43
exon number 9
gene id LOC113545962
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 3728652 ~ 3742306 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCGCGACAGGCGCGGAAAAGCTGTCACAATCAAAAATGGCGGAAGGCAGCCCATCGGCTCTTTTGAAATATAAGTGCTATAGATGGTGCAGAGGTGAAACGCATTTCAGGAACAAACACCCCTTTCAGAATAAAGCTGTACAAAGAGGCAACTGGGAAGGCTTATCAAAGAATAACACTGTTCATATGCACAGTTCAAGACTTTTCAGCCAGTGATGGTAGTGGGAATTCTTCTAGCAAAGACTCTGAAGTGTAAAATCTACCTCTAACAGTCCACATTATGAGAGTGACACTTTGGTATGGGATGGTCCAGcAATTACACACGTCTGTATGAACCAAGAGTAATCAAAAGTGACACAGAAGAGTCACACGAGAGCAGACAACATGTTCAAGAGGAAAGCACAGATGTATTAACTGCTGCAGACATTGTGTCAGAACTCTCACTGAAGATCATAAGATCATAAATCGAGCTAATGTTTGGGATCGAGCAGTTCCTGGTTTTAAACGTGCCTCATATGACTTATTACATGACATGCTTGTCAGATTCACAGATGACGAAGGAACAACTGAAGAGGCAGTGGACACGAGTGGTCCCAAACAAAAACAATCCATGCTGCGGATCATCGCAGTTTCTATTGTTCATGGTGGTCCAGAGATGCTATACAATCACCTCACTGGGAGGATTCACTTTGATGGAACAGTTGAAGATGTAACAGATGAGACCAGGAAGGCAGCGTTGCTTGAACCCAGATATCCACTGCAGCATCACTGGATGAACTACACATGGTCATTGATAAGTATGCCAGTTTGCTGCAGACTGCTGGATGTTTTGAGTACACACAAAGTGTAGAAGGCAGAGAGAACATTGTGAAGGATTTCATACAGTGGTACATAATATACAGAAATCAGTACTCAATACAGGGATTTAGGGATAGGCTTTCCACACTGGATGTCATCCATTCCCTGGAACAGCATCCAATTGTATTCAGACCCTATATGTGCTATGGTGTTGAGAAACTAACACCTGAATCATTGGAGGCTCTCTTTAAGGCTCAGCTCAGTGAAGTAGGTAGCACCAGACGACAAGAAGAAATCAGAATACTTGGATACTGGAGAGACTATCTGCTTGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25271 lncRNA upstream 1105 3728652 ~ 3736903 (+) False LOC113545962
TU25276 lncRNA upstream 4915 3731917 ~ 3733093 (+) True G21203
TU25269 lncRNA upstream 23017 3713307 ~ 3714991 (+) True G21197
TU25247 lncRNA upstream 55754 3681981 ~ 3682254 (+) True G21178
TU25237 lncRNA upstream 71036 3666745 ~ 3666972 (+) True G21168
TU25285 lncRNA downstream 8343 3750033 ~ 3758428 (+) True G21212
XR_004579598.1 lncRNA downstream 87899 3829589 ~ 3836969 (+) True LOC113545823
XR_003404662.2 lncRNA downstream 87899 3829589 ~ 3836969 (+) False LOC113545823
XR_004577200.1 lncRNA downstream 104923 3846613 ~ 3848899 (+) True LOC113545954
TU25324 lncRNA downstream 116524 3858214 ~ 3860978 (+) True G21249
XM_026945525.2 mRNA upstream 33100 3686621 ~ 3704908 (+) True nelfcd
XM_026945579.2 mRNA upstream 56542 3667276 ~ 3681466 (+) True aamp
XM_034312086.1 mRNA upstream 88754 3634096 ~ 3649254 (+) True fam210b
XM_034312081.1 mRNA upstream 124467 3589067 ~ 3613541 (+) True LOC113545866
XM_034314590.1 mRNA upstream 150365 3579754 ~ 3587643 (+) True LOC117599945
XM_026945572.2 mRNA downstream 113270 3854960 ~ 3920608 (+) True gnas
XM_026945604.2 mRNA downstream 228095 3969785 ~ 4005335 (+) True dzip1
XM_034310200.1 mRNA downstream 319201 4060891 ~ 4110323 (+) False LOC113545970
XM_034310197.1 mRNA downstream 319202 4060892 ~ 4110323 (+) True LOC113545970
XM_026945666.2 mRNA downstream 370484 4112174 ~ 4127858 (+) True ddx3xb
XR_004580290.1 other upstream 159700 3564210 ~ 3578308 (+) False LOC117599944
XR_004579769.1 other upstream 370721 3340446 ~ 3367287 (+) False gorasp2
XR_004577413.1 other upstream 551008 3182307 ~ 3187000 (+) True LOC113545950
trnaf-gaa_12 other upstream 747527 2990409 ~ 2990481 (+) True trnaf-gaa_12
trnaf-gaa_11 other upstream 749133 2988803 ~ 2988875 (+) True trnaf-gaa_11
trnah-gug_1 other downstream 609987 4351677 ~ 4351748 (+) True trnah-gug_1
XR_003404681.1 other downstream 918319 4660009 ~ 4660123 (+) True LOC113545978
XR_004579614.1 other downstream 1012576 4754266 ~ 4759645 (+) True spega
TU26030 other downstream 1346444 5088134 ~ 5088578 (+) True G21835
TU26124 other downstream 1466656 5208346 ~ 5208864 (+) True G21901

Expression Profile