RNA id: XR_003404661.2


Basic Information

Item Value
RNA id XR_003404661.2
length 1642
lncRNA type inter_gene
GC content 0.45
exon number 4
gene id LOC113545816
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 4245757 ~ 4255362 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAAAGCACAGCCCAGTGAATTTATGCTGATAGAAAtggggtggagagagagagctgtcaGCTGCGAACATCTTAATCAAACCTCCGACTACATTCCTCGGTTCTGAAGGCACAAACCTTAAACAGATTCGGTTCATTTACAGGCGACCCTCTGCCTCTAACCTGAGGTCAGCACTGgtgtaatgtaaacaatgcGAGACGAGGTAGTTCAGGCACGGCCCCGAAATGCAGCTGGAATCTGGAAGCGTGAACAAGCAAGCAGCCGACATTGCAGACTGACACATCGGGGTGCGCGCGAGAGCAGCGCGAGAGCAGCGCGAGCTCCACACGGCTGATAAAGCGGGACCGAGAGGGCGGCAGATGGCCAGCGCGAGGGGATGAGATCACTCACAGAACGAAGCAGAAGTGAAGCGAGGAGAGAGAGCTCGGAACTGTTAGCGCACAACCGGGGACGAGGCTGGGACTCCGGACACGCAGGGAAGAAATTCAGTTTGGAGACATGGCCTTTTCCTCCTCAATGAATGACCTTCTCCTCACCCAGccattcagaaaaaaagtgaCAGTAAAAGACAGCTCCCGGGATAGGACAGATCAAAATGAAGACCCGCCCCTCCACCCTTACTGCTCCCGCCTCTCTTTTAAAAGGTCCACCTGGCAGCATGTGACCCAATTACAGCACGGGAGATAAAAAGGGCACAGTGTACAGTGAAAATTCTGAACCAGCCACACAGAGACTGAAAAAGTGTTATGGGAAATAATGAATAGGAGAAAGTATTTCAAGAAAGACTGACAGATTTCTTGAGACAGTTCCACATAATTGTCACCTGTTCTCAAGGTGATGGGTAAATTCCTGCGCTCTTTAAGAAACTGAGACTGTGGAAGTGAGGTCGCTGGAATCACAGGGAGAAGAGAAATCAGACAGAGTAAGTAGAGAATTTAACTGGGGAAATGACTGAGGAGGGGTTATGGACATGTATTGCATGCCATGTCACGATTGCGAAATTGCTTGCCAGGTTATGACAGCCAAGTGAGGAATAGGTTTgtgggtagtgtgtgtgtgtgtgtgtgttggtgggggAACAGCTTCTGTAAAAGGAGAAATtgaagagaggaagacagaggcAGGACGGCTTCCTCTACACATCCTCATCACTGATGCCATTTCATCTCTACTTTCCTTCATGCATAAAAGGCAGGTTTTTATTCTTACATGTTTTCAAGCTGATGGCCTTTTTCAAGATGTGCCTTGGTCTCAACTTGGACTTTATTCAAATTCCATTTCATCTCTTGGGGGTAACcttataattacattacaaattCTGCCTCTGCCATATTATGTTCGTTAGTTCAAAGGTACTGAGGTGTATAAAGAGGTACAACAAACTGAAGTAGAATCTTTACTGAGGCACTTCTATAACAAGGTAGTGCTggataattaattataatatcatttgtgtgtatttgccAGTCAGTGAGTGCTTCCATTCTACCAAATGAGATCAAATTTTTAACAGTTGAAATTGTAGCAACCGACACTTTTGCTCATATTAAAGGATTTCATTTAAATGGAACATTTGTTTCAGCTAATGTGATGTTCATTATTAGTACAAATAATGAATTTCATTATGTGATTTATGCATATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25534 lncRNA downstream 5006 4169002 ~ 4244436 (-) True G21413
TU25544 lncRNA downstream 17347 4192003 ~ 4232095 (-) True G21422
TU25539 lncRNA downstream 95546 4146736 ~ 4153896 (-) True G21417
TU25441 lncRNA downstream 121598 4122995 ~ 4127844 (-) True G21333
TU25449 lncRNA downstream 137788 4111282 ~ 4111654 (-) True G21341
TU25564 lncRNA upstream 16617 4271809 ~ 4272029 (-) True G21441
TU25634 lncRNA upstream 98907 4354099 ~ 4354315 (-) True G21486
TU25710 lncRNA upstream 172001 4427193 ~ 4429341 (-) True G21546
TU25719 lncRNA upstream 187664 4442856 ~ 4443450 (-) True G21552
TU25721 lncRNA upstream 190611 4445803 ~ 4446215 (-) True G21554
XM_026945639.2 mRNA downstream 210158 4034071 ~ 4039284 (-) True cldn10a
XM_026945452.2 mRNA downstream 223464 4023790 ~ 4025978 (-) True si:busm1-52i16.2
XM_026945608.2 mRNA downstream 240865 4004622 ~ 4008577 (-) False si:ch211-181l5.2
XM_026945607.2 mRNA downstream 240865 4004622 ~ 4008577 (-) True si:ch211-181l5.2
XM_034314254.1 mRNA downstream 290624 3938000 ~ 3958818 (-) False stx16
XM_026945430.2 mRNA upstream 103928 4359120 ~ 4365171 (-) True prelid3b
XM_034310026.1 mRNA upstream 103928 4359120 ~ 4365128 (-) False prelid3b
XM_026945646.2 mRNA upstream 220660 4475852 ~ 4483914 (-) True LOC113545959
XM_026945449.2 mRNA upstream 335192 4590384 ~ 4618467 (-) True igfbp2a
XM_026945422.2 mRNA upstream 462218 4717410 ~ 4719627 (-) True inha
XR_004579840.1 other downstream 471454 3750018 ~ 3777988 (-) True rab22a
XR_004580246.1 other downstream 512556 3717715 ~ 3736886 (-) False npepl1
trnaf-gaa_13 other downstream 1212086 3037284 ~ 3037356 (-) True trnaf-gaa_13
TU24006 other downstream 2426880 1812759 ~ 1822562 (-) False slc9a7
TU23548 other downstream 3211868 1028859 ~ 1037574 (-) False slc48a1b
TU25557 other upstream 1476 4256668 ~ 4257087 (-) True G21434
trnaf-gaa_14 other upstream 76907 4332099 ~ 4332171 (-) True trnaf-gaa_14
XR_004577457.1 other upstream 192175 4447367 ~ 4447479 (-) True LOC117596284
XR_004577458.1 other upstream 203144 4458336 ~ 4458447 (-) True LOC117596286
XR_003404665.2 other upstream 558083 4813275 ~ 4902011 (-) False obsl1a

Expression Profile