RNA id: TU25544


Basic Information

Item Value
RNA id TU25544
length 3638
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G21422
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 4192003 ~ 4232095 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCACACTCAAAACTTTGATTTTGACCTCAGAATCTTCTTCTGAATATGTCACTCAAGTTTCATGCAAATCCACCCAAGTAGTAACAAGTTTGATATGTCTGAGTAAATTAGCATTGGGAAATGCCtgctaaaatctgattggctgcaggtGGCCATTTaattaactgatttttttacCAATCAGTTATAGATTAGCAGAGAGATGCAGCACAGTCACACAGTTCTGTGTAGTTtaacatcaatttttttttttaaggttggccaaaaatcctaggactagttcacaaaagtaggttgtgcatattatgcaaattatctcTAATAATGCCGGATGTTCCATAAGGCAATTTTGTAGAGTTTGTTCAAACAAATTAAGCTGAAGACGAATTTTCACTGTACACCTTATTTTTCAAGAGagatgcttgtttttgtgtgcacaaacatgaagagtgcccccagtggccaatctGAGTAAGAGTGCATCAGATACTAATGGGTCCCTACCTGAACCAGccattcaagtttcatgacaaTAGCTTAAttttaaccctgtcaaatgGCTGCTGAAACCTGATTGGCCTATTGCAGCCATGTGTTTTCTGTAATAAGGTCATCAAAAATCTCCTTGCACATAGGATAGATGCaccacaccaaatttcagcttgatcgGATGTGATCAAACAgttatctgaccttagctcTACTCCTTTGAATGACCATGCCCAAAACTTTGCATATGTATAAACtgtcgtgtgtgaaaatcccaggagatcagtagtttctgaaatactgaaaccagtccatctggcaccaacaaccatgccacgttTAAAGTCAAAggaatcacactttttcccccattctgatgtttgatgtaaacagtaactgaaactcttgaacTGTATCTGTATGAACCAAATTAAGAAATTTCTTTCTACtccttattttccaagagatatgcatgtttgtgtgcaaaaacatgaatatcACCCCAGTGGTTGATTTCAGTGAGAGTGCATCAGGTACTAGAGGGTCCCTACCGTTCAAGTTTCGTGACGATAACTCAATAGTAAACctgtgaaatgcctgctgaaaactGATTAGCCCATGATGGCCATGATTTATAAGTAATCATGTCAGCATCAAAAGTCCACTTGCAGATTAGAACCAAGATGCAGcgtaccaaatttcagcttgatcgcacttacagttcctgagaaacaTTTTCCTGAACTTAGCTCTACCTCCTATTGATGACCGTGCCCCAAAGTCTGCAGACCTCCTCAGCACCTTGTCCTGAAGGGGCCTGTCAAGTTTTCTTCAAGTCCATAGAAATAATCATGAGTTAAAGCTGTCTGAGTAAATTAGACTGCACCCCTAAAATgaactaaggggcctagcccaaacccCGAAAAACAGCCCTGATTattatccctcctccaccaaactttactgttgGTGCTACGATTTCTGCTAGGTAGTGCTGTCCTGGCATCTGCCAAACCCAGATTAGTCCAAACGACTGCAAGACAGTgaattcatcactccagagaacacattTTCACTGCTCCAGAGAGTACAGTGGCAGCATGCTTTATACCAATCCAGCAGACGCTTGGCACTGCACATAGAGATCTCAGGTTTGTGTGCAGCCGctcagccatggaaacccatttcatgaagctcctgATGCACAGCTCTTATGCTGTTGCTTCCAGAGTCATTTTGGTactctgtagtgagtgataCAAAAGAGAATAGGCATTTTCTTTATGTGAATTTACATGGTCTACCGCTTTGTGGCTGTTATTGTCCTAGATTCTTCCATTTTACAATAATAGCATTTACATTTGACCGGGGAAGGTCTAGCAAGGCAGAAATGTCATGAACTGACATGTGACAAAGGTAGCGTCTTATGacagtgtcagtgtttaaaaTCAGGAGCTCTTCTGTATGACCCATTCTCTTTCCACTGTTTGTCTATGGAGATTGCATAGCATAGCAATGAGtttggctgaaacacctgaactccATATACCTCCACATacctttgaccatatagtgtaaatttaataacaatattgtTGCACATTGTGcaatcacaaataaaaataaaaacagtatttacTAATTACTTTTCACATGAGAAAGCTCAGGGaatatgtgcatttttattttatgagggATTTACTTGACCTTAGCTGTTCACTAATGTTGCTAAGATCTCATAGTGAACGTGAGGTTcagtaaaatgcattttatgatTGGATTTGCAATTAGGTGTTCTGACTGAGTTCATCGGGTGGGTTGTCGTTATCGTGATATAACCAAAATAGCTTCCACCAACTGTTATACTGTAGCTTAAATTATGCTACTTGACAAACTTATACTGCACGTTACATTTCCATTAGTCTACATCCCACTGCTTTTTCCAAGTTTTTATACgtatgtacatatgtacatCAGAGTCTCCACTAGGAATTTTTGGCGCTGGTCACGGTGTCCGGGAACTCTGCAGTTTACCAAATGAGTAGAATTCCACTTATATGTTAATGACTATTGCTGCAAGAAAACTCTGAAATTTGAATGACCCCATCAAGTAAAATTAacgtttaattaacattttttgcatacagtcaacatttacataaacataaagaaAATAGTCAACAGGCTTATGAATGCAACAAACAGCAGAGAACAAGAAAATGTTCCAGTAATGAAAAATACACTCACCGCCCACCTTCATGCAGTAATGAAAAATACACTCACCGcccacattcatgcagttatcgaaatcagtcaatcatgtggcagctgcacaatgcaaaaaatcatgcaggtacaggtaatgttgagcttcaggtaatgtgaTGACTgcgactttgatcatggcatggatgttggtatcagatgtgctggtttgagtatttcagaaactgttgatctcctgggattctgtgtaaactctagagactgttgtgtgttaaaatcccagatcatcaacagtttctgaaatacttgaAGCAGCCCATTTGCCACATTTCACGGGTAAAGTCACAAAGATCAcgtttttcccccattctgatgtttgacatgaacattaactgaaggtcttgacctgtatctgcatgattttatgcactgtgctgctgccatgaTTTTATAATTGGCTGACtgcataactgcataaatgagcaggtgttaaAATTTAAAGTGGATGGGGAGTGTATTACTTTGACACAGCTGCTAAAAACATTCCATTCGTCTTTGTTTTAACTagattgaaatgtatttaaagaagcACCCAAATGGGACCTTGCAATGCATTTGCACAACTGTACAacatttctgggttttttttgcagctgGACCAGGATCATATGTCTCTGTGACCTCACCATGTTCCTCACTGTCTCGATTAGGCTTATCAGAATCACCTGCTTTCAGTAAGAAACTTTTAAGGGTCAACTCTTTCACCATTGTCTGTTCAACCGCACGACTGCACAGTGACTACTTGCCGGAAGATCTCAGCATCAGCCACATTGAGTTCCACAAGGAAGAGGAAATCTGATCTTTGGAAAGTAGTATCTGAATGGGTAAgagaaaatttttattttgtttaactgtgtgtttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25539 lncRNA downstream 38107 4146736 ~ 4153896 (-) True G21417
TU25441 lncRNA downstream 64159 4122995 ~ 4127844 (-) True G21333
TU25449 lncRNA downstream 80349 4111282 ~ 4111654 (-) True G21341
TU25521 lncRNA downstream 114176 4077128 ~ 4077827 (-) True G21400
XR_004579416.1 lncRNA downstream 143785 4044564 ~ 4048218 (-) False LOC113545971
TU25540 lncRNA upstream 13662 4245757 ~ 4255362 (-) True LOC113545816
XR_003404661.2 lncRNA upstream 17347 4249442 ~ 4255192 (-) False LOC113545816
XR_004579507.1 lncRNA upstream 17347 4249442 ~ 4255191 (-) False LOC113545816
XR_003404659.2 lncRNA upstream 17347 4249442 ~ 4255184 (-) False LOC113545816
XR_003404660.2 lncRNA upstream 17350 4249445 ~ 4255184 (-) False LOC113545816
XM_026945639.2 mRNA downstream 152719 4034071 ~ 4039284 (-) True cldn10a
XM_026945452.2 mRNA downstream 166025 4023790 ~ 4025978 (-) True si:busm1-52i16.2
XM_026945608.2 mRNA downstream 183426 4004622 ~ 4008577 (-) False si:ch211-181l5.2
XM_026945607.2 mRNA downstream 183426 4004622 ~ 4008577 (-) True si:ch211-181l5.2
XM_034314254.1 mRNA downstream 233185 3938000 ~ 3958818 (-) False stx16
XM_026945430.2 mRNA upstream 127025 4359120 ~ 4365171 (-) True prelid3b
XM_034310026.1 mRNA upstream 127025 4359120 ~ 4365128 (-) False prelid3b
XM_026945646.2 mRNA upstream 243757 4475852 ~ 4483914 (-) True LOC113545959
XM_026945449.2 mRNA upstream 358289 4590384 ~ 4618467 (-) True igfbp2a
XM_026945422.2 mRNA upstream 485315 4717410 ~ 4719627 (-) True inha
XR_004579840.1 other downstream 414015 3750018 ~ 3777988 (-) True rab22a
XR_004580246.1 other downstream 455117 3717715 ~ 3736886 (-) False npepl1
trnaf-gaa_13 other downstream 1154647 3037284 ~ 3037356 (-) True trnaf-gaa_13
TU24006 other downstream 2369441 1812759 ~ 1822562 (-) False slc9a7
TU23548 other downstream 3154429 1028859 ~ 1037574 (-) False slc48a1b
TU25557 other upstream 24573 4256668 ~ 4257087 (-) True G21434
trnaf-gaa_14 other upstream 100004 4332099 ~ 4332171 (-) True trnaf-gaa_14
XR_004577457.1 other upstream 215272 4447367 ~ 4447479 (-) True LOC117596284
XR_004577458.1 other upstream 226241 4458336 ~ 4458447 (-) True LOC117596286
XR_003404665.2 other upstream 581180 4813275 ~ 4902011 (-) False obsl1a

Expression Profile