RNA id: TU25744


Basic Information

Item Value
RNA id TU25744
length 410
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G21577
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 4525923 ~ 4526332 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTGTATCGTGTCCAAGGAATATTGAACCAGCATGGataccacagcattttacaGCGACATGCTATTCCATCTGGTCAGCGCCTTATTGGTCATTGCTTCATctttcaacaagacaatgacccaaagcatacttcCAAGCTGTGCAAGTCATATCTGGAGAAGAAACAGTCAGCCGGTGTCTTGTCTATCATGGAGTGGCCTGCCCAAtcacctgaccttaaccccattgagCTGCTATGGGAGGAACTGGACCGTGATGTCCGTAAGAAGTGTCCAACCAGTGTGAATCATCTTTGGGCAATCCTCCAGGAGGCTTGGGGTAATATATCAAGTCAATGTTTGAATAAACTGACTGCTCGGATGCCTAGAGTATGTAGAGCTGTAATAGCTGCTAATGGGGATTTCTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25675 lncRNA upstream 68077 4457272 ~ 4457846 (+) True G21514
XR_004579534.1 lncRNA upstream 91187 4429407 ~ 4434736 (+) True LOC113545955
TU25662 lncRNA upstream 93440 4429422 ~ 4432483 (+) False LOC113545955
TU25610 lncRNA upstream 184583 4341127 ~ 4341340 (+) True G21475
TU25604 lncRNA upstream 189287 4336254 ~ 4336636 (+) True G21469
TU25799 lncRNA downstream 131882 4658214 ~ 4663379 (+) True G21629
TU25948 lncRNA downstream 281791 4808123 ~ 4808427 (+) True G21763
TU25957 lncRNA downstream 304571 4830903 ~ 4834058 (+) True G21771
TU25983 lncRNA downstream 352877 4879209 ~ 4902000 (+) True G21791
XR_003404676.1 lncRNA downstream 385471 4911803 ~ 4913793 (+) True LOC113545969
XM_034312090.1 mRNA upstream 82282 4442811 ~ 4443641 (+) True LOC117599286
XM_034313277.1 mRNA upstream 100379 4392506 ~ 4425544 (+) False LOC113545914
XM_026945450.2 mRNA downstream 40402 4566734 ~ 4587196 (+) True igfbp5a
XM_026945569.2 mRNA downstream 124674 4651006 ~ 4692028 (+) False stk11ip
XM_026945567.2 mRNA downstream 126667 4652999 ~ 4692028 (+) True stk11ip
XM_026945566.2 mRNA downstream 126667 4652999 ~ 4692028 (+) False stk11ip
XM_034310135.1 mRNA downstream 182255 4708587 ~ 4717273 (+) False LOC113545806
trnah-gug_1 other upstream 174175 4351677 ~ 4351748 (+) True trnah-gug_1
XR_004580256.1 other upstream 784233 3738008 ~ 3741690 (+) False LOC113545962
XR_004580255.1 other upstream 784233 3738253 ~ 3741690 (+) True LOC113545962
XR_004580290.1 other upstream 947615 3564210 ~ 3578308 (+) False LOC117599944
XR_004579769.1 other upstream 1158636 3340446 ~ 3367287 (+) False gorasp2
XR_003404681.1 other downstream 133677 4660009 ~ 4660123 (+) True LOC113545978
XR_004579614.1 other downstream 227934 4754266 ~ 4759645 (+) True spega
TU26030 other downstream 561802 5088134 ~ 5088578 (+) True G21835
TU26124 other downstream 682014 5208346 ~ 5208864 (+) True G21901
XR_003402786.2 other downstream 1191198 5717530 ~ 5753104 (+) False rbl1

Expression Profile