RNA id: TU25983


Basic Information

Item Value
RNA id TU25983
length 1564
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id G21791
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 4879209 ~ 4902000 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTTTACTGATAATTCTGCAATGCTTTTCCCACCATCAGGCATCTCACATACATAGACTCCATCATCGTCTGCCCCTACATCTTGTATAGTAAGACGCCGTCTTGTTCCATTCTGTTCCATGCTATATTTACTCCCTGGCTGAAGTCTCTGGTCTTCTAGGTACCATACGGTGGGGACAGACTCTTCTGGAACCTCACACTCCAGAATGGCAACATCCTTTTCCCTCACTTCCATGTCATGCAGAGCCCGTTTGAACTGCACTGGGGGCccTTTACAGAGAGTTGTACAGCACTTAATGTGTTCCCCAGTGTGTTTGATGCAGTACAGATGTACAGCCCAGTGTCTTGCTGCTTGCAGTAAAGAACTTTCAACGTATAGTGCCCCTCCCTGTCCTCAAACACTAGGTGACGTCGTCCAGGCACAATTGATTCCCCATCTTTCTTCCACAGGATCTCAGGTTTGGGTTTACCTGTTACATAGCAACGAAATTTGGCATGTTTGCCTTCTGTGATCATGAACTTCTTGGCCTTAGCCACATTCAGGTGCTTTCCTCTTGAGTATGTGTCCTTCTCACATGAGTATTTCCATTTTGAATGCATGTCATTCTGGTCTGGAGATGAGTGGCCATTGGTGTAGCCATTTCGACGGTTCTTCCCGACTTGCTCAGGCATACTTTCAACCAACAATACAGCTCCAGTCACAGCTTCACCATACTGATTGACTGCTTTGCAGGTGTAGACTCCTCCATCTGGGGCTCGTGTTTGGAAGATCTTCAGCTGGAACCATCCTTCATTTTGTTGGCTGATGCAAAAGTGTGAGCTCTCATAGATCTCATTGACTTGCTTGCCATCTTTCTCCCACACAACCTCAGATAAGGGATTACCCCAAAGCTTGCATGAGAAGGCAGCATCTTCTCCTTGATCTACTCTCAAGGACAGAGGTTTGATGAGGAACCGGGGTTTGTTGTCCTGAAAAAGATCTGCCTCCATGTCCGACAAAGGCTGCTtgagattttttatttcttgttttggtGGAATAACCATAATTTGCTGTTGTTCTTGCAGGGGATACATCATCTGAACATTTTGGGTTTCCTCTTCTACTTTAAGAGTAGCAGCTGCATAAGTATCCCCAATGCTGTTCTTAGCTCTGCAGATGTACTGTCCAGCATCTTCCAGAGTGACCTGATAGATGGAGAGGGTGCACACGTTGCCATCCTGGGTAATGCAGTAGCGACCCTCAGGGATAATGGGTTCATTCAGTCTCTCCCACAACACATCAGGTTTTGGATCTCCACTGATCTGACATTTAAGGACTGCATCTGACCCACTTTTCACCAGAACTGAACGTGGGTATCCAAGAACACGGGGGGCACCACCAAACACATCCATGGCTGCTGTTATTTAGTGAAGGCTTGCAATATGAAATtgtctttattaaaattaagCACTCCTGGCTTTCTTTACTAAATttcaaacTTAATAAATTCCAAAGTAGTGCAATTCCCTCCAGCTTTTCCTGTTACTGTCAAGCTTCCTTTATATGTGGAGATGTGTTTGGCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25957 lncRNA upstream 45151 4830903 ~ 4834058 (+) True G21771
TU25948 lncRNA upstream 70782 4808123 ~ 4808427 (+) True G21763
TU25799 lncRNA upstream 215830 4658214 ~ 4663379 (+) True G21629
TU25744 lncRNA upstream 352877 4525923 ~ 4526332 (+) True G21577
TU25675 lncRNA upstream 421363 4457272 ~ 4457846 (+) True G21514
XR_003404676.1 lncRNA downstream 9803 4911803 ~ 4913793 (+) True LOC113545969
XR_004577063.1 lncRNA downstream 15145 4917145 ~ 4918634 (+) True LOC117595874
TU26126 lncRNA downstream 307865 5209865 ~ 5210117 (+) True G21903
TU26152 lncRNA downstream 355602 5257602 ~ 5257827 (+) True G21928
TU26199 lncRNA downstream 427895 5329895 ~ 5330285 (+) True G21973
XM_026945633.2 mRNA upstream 119564 4754266 ~ 4759645 (+) False spega
XM_034310135.1 mRNA upstream 161936 4708587 ~ 4717273 (+) False LOC113545806
XM_026945421.2 mRNA upstream 161936 4708842 ~ 4717273 (+) True LOC113545806
XM_034310134.1 mRNA upstream 161936 4709039 ~ 4717273 (+) False LOC113545806
XM_026945566.2 mRNA upstream 187181 4652999 ~ 4692028 (+) False stk11ip
XM_026920348.2 mRNA downstream 220720 5122720 ~ 5127596 (+) False wbp4
XM_026920338.2 mRNA downstream 220721 5122721 ~ 5127596 (+) True wbp4
XM_026920371.2 mRNA downstream 238401 5140401 ~ 5154427 (+) True LOC113530419
XM_034313879.1 mRNA downstream 337845 5239845 ~ 5255979 (+) True nhej1
XM_026918678.2 mRNA downstream 337851 5239851 ~ 5255979 (+) False nhej1
XR_004579614.1 other upstream 119564 4754266 ~ 4759645 (+) True spega
XR_003404681.1 other upstream 219086 4660009 ~ 4660123 (+) True LOC113545978
trnah-gug_1 other upstream 527461 4351677 ~ 4351748 (+) True trnah-gug_1
XR_004580256.1 other upstream 1137519 3738008 ~ 3741690 (+) False LOC113545962
TU26030 other downstream 186134 5088134 ~ 5088578 (+) True G21835
TU26124 other downstream 306346 5208346 ~ 5208864 (+) True G21901
XR_003402786.2 other downstream 815530 5717530 ~ 5753104 (+) False rbl1
TU28587 other downstream 4548925 9450925 ~ 9454462 (+) False hmga1b
TU28588 other downstream 4548925 9450925 ~ 9454462 (+) True hmga1b

Expression Profile