RNA id: TU26152


Basic Information

Item Value
RNA id TU26152
length 226
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G21928
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 5257602 ~ 5257827 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaagctgcttggtGACAAtatccactgttaaaagcgctatacaaataaaattgaattgaaataggtttaataaaaatgtacaatgtttCAGACTAGTTAGATTATACTATAGTTTAACAGTAGTTTACTTAATTGTTTGACTCACTAGCCAGTGAGGTAATGACAGCTTACTCTGGTAAAGTAGTTAGTAGCATgcttaatgaaaatgaaacattttgcaGTTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26126 lncRNA upstream 47485 5209865 ~ 5210117 (+) True G21903
XR_004577063.1 lncRNA upstream 338968 4917145 ~ 4918634 (+) True LOC117595874
XR_003404676.1 lncRNA upstream 343809 4911803 ~ 4913793 (+) True LOC113545969
TU25983 lncRNA upstream 355602 4879209 ~ 4902000 (+) True G21791
TU25957 lncRNA upstream 423544 4830903 ~ 4834058 (+) True G21771
TU26199 lncRNA downstream 72068 5329895 ~ 5330285 (+) True G21973
TU26208 lncRNA downstream 76821 5334648 ~ 5334864 (+) True G21982
TU26266 lncRNA downstream 177939 5435766 ~ 5437469 (+) True G22032
TU26269 lncRNA downstream 179726 5437553 ~ 5463156 (+) True G22033
TU26271 lncRNA downstream 179726 5437553 ~ 5443844 (+) False G22033
XM_034313879.1 mRNA upstream 1623 5239845 ~ 5255979 (+) True nhej1
XM_026918678.2 mRNA upstream 1623 5239851 ~ 5255979 (+) False nhej1
XM_034313875.1 mRNA upstream 1623 5240319 ~ 5255979 (+) False nhej1
XM_026920371.2 mRNA upstream 103175 5140401 ~ 5154427 (+) True LOC113530419
XM_026920348.2 mRNA upstream 130006 5122720 ~ 5127596 (+) False wbp4
XM_034313088.1 mRNA downstream 218923 5476750 ~ 5489524 (+) True chmp4ba
XM_026917112.2 mRNA downstream 218929 5476756 ~ 5489524 (+) False chmp4ba
XM_026917125.2 mRNA downstream 243825 5501652 ~ 5502394 (+) False atp5f1e
XM_034312823.1 mRNA downstream 265097 5522924 ~ 5538437 (+) False ergic3
XM_026915801.2 mRNA downstream 265098 5522925 ~ 5538437 (+) True ergic3
TU26124 other upstream 48738 5208346 ~ 5208864 (+) True G21901
TU26030 other upstream 169024 5088134 ~ 5088578 (+) True G21835
XR_004579614.1 other upstream 497957 4754266 ~ 4759645 (+) True spega
XR_003404681.1 other upstream 597479 4660009 ~ 4660123 (+) True LOC113545978
trnah-gug_1 other upstream 905854 4351677 ~ 4351748 (+) True trnah-gug_1
XR_003402786.2 other downstream 459703 5717530 ~ 5753104 (+) False rbl1
TU28587 other downstream 4193098 9450925 ~ 9454462 (+) False hmga1b
TU28588 other downstream 4193098 9450925 ~ 9454462 (+) True hmga1b
XR_004577034.1 other downstream 4334114 9591941 ~ 9596854 (+) False LOC113532547
TU28879 other downstream 4637418 9895245 ~ 9907171 (+) False LOC113530691

Expression Profile