Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU26199 |
| length | 391 |
| lncRNA type | inter_gene |
| GC content | 0.38 |
| exon number | 1 |
| gene id | G21973 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047596.1 |
| NCBI id | CM018542.1 |
| chromosome length | 35203048 |
| location | 5329895 ~ 5330285 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU26152 | lncRNA | upstream | 72068 | 5257602 ~ 5257827 (+) | True | G21928 |
| TU26126 | lncRNA | upstream | 119778 | 5209865 ~ 5210117 (+) | True | G21903 |
| XR_004577063.1 | lncRNA | upstream | 411261 | 4917145 ~ 4918634 (+) | True | LOC117595874 |
| XR_003404676.1 | lncRNA | upstream | 416102 | 4911803 ~ 4913793 (+) | True | LOC113545969 |
| TU25983 | lncRNA | upstream | 427895 | 4879209 ~ 4902000 (+) | True | G21791 |
| TU26208 | lncRNA | downstream | 4363 | 5334648 ~ 5334864 (+) | True | G21982 |
| TU26266 | lncRNA | downstream | 105481 | 5435766 ~ 5437469 (+) | True | G22032 |
| TU26269 | lncRNA | downstream | 107268 | 5437553 ~ 5463156 (+) | True | G22033 |
| TU26271 | lncRNA | downstream | 107268 | 5437553 ~ 5443844 (+) | False | G22033 |
| TU26267 | lncRNA | downstream | 122078 | 5452363 ~ 5463156 (+) | False | G22033 |
| XM_034313879.1 | mRNA | upstream | 73916 | 5239845 ~ 5255979 (+) | True | nhej1 |
| XM_026918678.2 | mRNA | upstream | 73916 | 5239851 ~ 5255979 (+) | False | nhej1 |
| XM_034313875.1 | mRNA | upstream | 73916 | 5240319 ~ 5255979 (+) | False | nhej1 |
| XM_026920371.2 | mRNA | upstream | 175468 | 5140401 ~ 5154427 (+) | True | LOC113530419 |
| XM_026920338.2 | mRNA | upstream | 202299 | 5122721 ~ 5127596 (+) | True | wbp4 |
| XM_034313088.1 | mRNA | downstream | 146465 | 5476750 ~ 5489524 (+) | True | chmp4ba |
| XM_026917112.2 | mRNA | downstream | 146471 | 5476756 ~ 5489524 (+) | False | chmp4ba |
| XM_026917125.2 | mRNA | downstream | 171367 | 5501652 ~ 5502394 (+) | False | atp5f1e |
| XM_034312823.1 | mRNA | downstream | 192639 | 5522924 ~ 5538437 (+) | False | ergic3 |
| XM_026915801.2 | mRNA | downstream | 192640 | 5522925 ~ 5538437 (+) | True | ergic3 |
| TU26124 | other | upstream | 121031 | 5208346 ~ 5208864 (+) | True | G21901 |
| TU26030 | other | upstream | 241317 | 5088134 ~ 5088578 (+) | True | G21835 |
| XR_004579614.1 | other | upstream | 570250 | 4754266 ~ 4759645 (+) | True | spega |
| XR_003404681.1 | other | upstream | 669772 | 4660009 ~ 4660123 (+) | True | LOC113545978 |
| trnah-gug_1 | other | upstream | 978147 | 4351677 ~ 4351748 (+) | True | trnah-gug_1 |
| XR_003402786.2 | other | downstream | 387245 | 5717530 ~ 5753104 (+) | False | rbl1 |
| TU28587 | other | downstream | 4120640 | 9450925 ~ 9454462 (+) | False | hmga1b |
| TU28588 | other | downstream | 4120640 | 9450925 ~ 9454462 (+) | True | hmga1b |
| XR_004577034.1 | other | downstream | 4261656 | 9591941 ~ 9596854 (+) | False | LOC113532547 |
| TU28879 | other | downstream | 4564960 | 9895245 ~ 9907171 (+) | False | LOC113530691 |
