RNA id: TU26261


Basic Information

Item Value
RNA id TU26261
length 1226
lncRNA type sense_over
GC content 0.42
exon number 3
gene id atp5f1e
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 5501645 ~ 5503231 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaaaaaatccctcgcCACAGTACCGGCAAAGAAGAGTACGTTCCTTCCGGTTCCTGTAGGCCTTGTCCTTGGTAAATATCGTCATTGGCAGGTTTTACCTGAACTCTCACAGTGACAGAGATGGTTTCATACTGGCGGCAGGCTGGACTCAGCTACATTAAGTACTCGGCGATCTGCGCCAGGGTGGTGCGGTCCGCGCTGAAACCTCAGCTCAGAACAGAAGCCATCAAAAACGCAGAAGCTAACGTCAAGGTCAATAAAGTGAAGACGACCTAATGAGCAGACCCAGAAGCCTGTCGTTCCCGATGTGAGAGTCGGCTGACAGAACATGGTTTCAGTTTATCACGTGTATTCCTGATAATAAATTATGATTCATTTTGTCAATACTACTTGATGTCTCGTTCATGGCCAACAGCGGACAGCATGTACCTAATGAGAGCAGCACTGCCAACACATAAGTTTAAGTTTAACTGGCTCCCAGtttaatattgcttttatacgaGCAGAAGACATGAATactgagtaactgacatttcagacacaatatggccaaataattagtttattttttcaaCGTGAACAGAAATAAATCCCAGAGAAGCCACACTGTTGTCTAGCTAGTGCTACATTCCTGTTATAGGTGCATCCTGGGAAactggcttcccttcttccttttcattttatctgagaagatttctttttctttttttttttaagtcagaagATATATTCTTGCAAAATAGATGGTTTGCGATGTCCGCTGCTGATGTCGCTGACTCTGCTGTAATGGTTTCAGTGGGACTGTTGGTAGAATTGGGATTTTATGtggcaaacagacaaacagagtgaataaacagtgaagtgtggttatactaaatataagcactcttggaacgccggctgtccaatcaaattagtggattagaactaactgttgtataataagtGTTGTACTACAGtgtatattcattaatttaccTTTTCTACAGTAGTAGAACAGTGCTGCTCATAGCCTTTAaaattggttgcacaattgcactatttgtccatatagtacacaataatagaagggaattatttataatcgcactatccgttgcactcagatgaggatgggttcccttttgagtctggttcctctcaaggtttcttccacaaatcatctcggggagtttttccttgccaccgtcacctctggcttgctcattagggataaattcacaggg

Function

GO:

id name namespace
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0022900 electron transport chain biological_process
GO:0022904 respiratory electron transport chain biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0015980 energy derivation by oxidation of organic compounds biological_process
GO:0045333 cellular respiration biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005746 mitochondrial respirasome cellular_component
GO:0044429 obsolete mitochondrial part cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0031967 organelle envelope cellular_component
GO:0031975 envelope cellular_component
GO:0070469 respirasome cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0009055 electron transfer activity molecular_function
GO:0003954 NADH dehydrogenase activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0050136 NADH dehydrogenase (quinone) activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0003824 catalytic activity molecular_function
GO:0016651 oxidoreductase activity, acting on NAD(P)H molecular_function
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04260 Cardiac muscle contraction
ko04723 Retrograde endocannabinoid signaling
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579880.1 lncRNA upstream 737 5494925 ~ 5500908 (+) True LOC117599465
TU26276 lncRNA upstream 34164 5467266 ~ 5467481 (+) True G22036
TU26269 lncRNA upstream 38489 5437553 ~ 5463156 (+) True G22033
TU26267 lncRNA upstream 38489 5452363 ~ 5463156 (+) False G22033
TU26271 lncRNA upstream 57801 5437553 ~ 5443844 (+) False G22033
TU26298 lncRNA downstream 45245 5548476 ~ 5610231 (+) True G22054
TU26352 lncRNA downstream 197497 5700728 ~ 5700976 (+) True G22097
TU26366 lncRNA downstream 205735 5708966 ~ 5709171 (+) True G22110
TU26387 lncRNA downstream 279075 5782306 ~ 5786459 (+) True G22123
TU26327 lncRNA downstream 289853 5793084 ~ 5794691 (+) True G22072
XM_034313088.1 mRNA upstream 12121 5476750 ~ 5489524 (+) True chmp4ba
XM_026917112.2 mRNA upstream 12121 5476756 ~ 5489524 (+) False chmp4ba
XM_034313879.1 mRNA upstream 245666 5239845 ~ 5255979 (+) True nhej1
XM_034312823.1 mRNA downstream 19693 5522924 ~ 5538437 (+) False ergic3
XM_026915801.2 mRNA downstream 19694 5522925 ~ 5538437 (+) True ergic3
XM_026915809.2 mRNA downstream 19694 5522925 ~ 5538437 (+) False ergic3
XM_026912152.2 mRNA downstream 46609 5549840 ~ 5552974 (+) False mych
XM_034310062.1 mRNA downstream 46834 5550065 ~ 5552974 (+) True mych
TU26124 other upstream 292781 5208346 ~ 5208864 (+) True G21901
TU26030 other upstream 413067 5088134 ~ 5088578 (+) True G21835
XR_004579614.1 other upstream 742000 4754266 ~ 4759645 (+) True spega
XR_003404681.1 other upstream 841522 4660009 ~ 4660123 (+) True LOC113545978
trnah-gug_1 other upstream 1149897 4351677 ~ 4351748 (+) True trnah-gug_1
XR_003402786.2 other downstream 214299 5717530 ~ 5753104 (+) False rbl1
TU28587 other downstream 3947694 9450925 ~ 9454462 (+) False hmga1b
TU28588 other downstream 3947694 9450925 ~ 9454462 (+) True hmga1b
XR_004577034.1 other downstream 4088710 9591941 ~ 9596854 (+) False LOC113532547
TU28879 other downstream 4392014 9895245 ~ 9907171 (+) False LOC113530691

Expression Profile