RNA id: XM_026917125.2


Basic Information

Item Value
RNA id XM_026917125.2
length 382
RNA type mRNA
GC content 0.48
exon number 3
gene id atp5f1e
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 5501645 ~ 5503231 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tccctcgcCACAGTACCGGCAAAGAAGAGTACGTTCCTTCCGGTTCCTGTAGGCCTTGTCCTTGGTAAATATCGTCATTGGCAGGTTTTACCTGAACTCTCACAGTGACAGAGATGGTTTCATACTGGCGGCAGGCTGGACTCAGCTACATTAAGTACTCGGCGATCTGCGCCAGGGTGGTGCGGTCCGCGCTGAAACCTCAGCTCAGAACAGAAGCCATCAAAAACGCAGAAGCTAACGTCAAGGTCAATAAAGTGAAGACGACCTAATGAGCAGACCCAGAAGCCTGTCGTTCCCGATGTGAGAGTCGGCTGACAGAACATGGTTTCAGTTTATCACGTGTATTCCTGATAATAAATTATGATTCATTTTGTCAATACTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579880.1 lncRNA upstream 744 5494925 ~ 5500908 (+) True LOC117599465
TU26276 lncRNA upstream 34171 5467266 ~ 5467481 (+) True G22036
TU26269 lncRNA upstream 38496 5437553 ~ 5463156 (+) True G22033
TU26267 lncRNA upstream 38496 5452363 ~ 5463156 (+) False G22033
TU26271 lncRNA upstream 57808 5437553 ~ 5443844 (+) False G22033
TU26298 lncRNA downstream 46082 5548476 ~ 5610231 (+) True G22054
TU26352 lncRNA downstream 198334 5700728 ~ 5700976 (+) True G22097
TU26366 lncRNA downstream 206572 5708966 ~ 5709171 (+) True G22110
TU26387 lncRNA downstream 279912 5782306 ~ 5786459 (+) True G22123
TU26327 lncRNA downstream 290690 5793084 ~ 5794691 (+) True G22072
XM_034313088.1 mRNA upstream 12128 5476750 ~ 5489524 (+) True chmp4ba
XM_026917112.2 mRNA upstream 12128 5476756 ~ 5489524 (+) False chmp4ba
XM_034313879.1 mRNA upstream 245673 5239845 ~ 5255979 (+) True nhej1
XM_026918678.2 mRNA upstream 245673 5239851 ~ 5255979 (+) False nhej1
XM_034313875.1 mRNA upstream 245673 5240319 ~ 5255979 (+) False nhej1
XM_034312823.1 mRNA downstream 20530 5522924 ~ 5538437 (+) False ergic3
XM_026915801.2 mRNA downstream 20531 5522925 ~ 5538437 (+) True ergic3
XM_026915809.2 mRNA downstream 20531 5522925 ~ 5538437 (+) False ergic3
XM_026912152.2 mRNA downstream 47446 5549840 ~ 5552974 (+) False mych
XM_034310062.1 mRNA downstream 47671 5550065 ~ 5552974 (+) True mych
TU26124 other upstream 292788 5208346 ~ 5208864 (+) True G21901
TU26030 other upstream 413074 5088134 ~ 5088578 (+) True G21835
XR_004579614.1 other upstream 742007 4754266 ~ 4759645 (+) True spega
XR_003404681.1 other upstream 841529 4660009 ~ 4660123 (+) True LOC113545978
trnah-gug_1 other upstream 1149904 4351677 ~ 4351748 (+) True trnah-gug_1
XR_003402786.2 other downstream 215136 5717530 ~ 5753104 (+) False rbl1
TU28587 other downstream 3948531 9450925 ~ 9454462 (+) False hmga1b
TU28588 other downstream 3948531 9450925 ~ 9454462 (+) True hmga1b
XR_004577034.1 other downstream 4089547 9591941 ~ 9596854 (+) False LOC113532547
TU28879 other downstream 4392851 9895245 ~ 9907171 (+) False LOC113530691

Expression Profile