RNA id: TU26271


Basic Information

Item Value
RNA id TU26271
length 967
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G22033
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 5437553 ~ 5463156 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TATAGGcatgttctttattttgtcattaaaaGAGTTTTTTGAATCACAGGCAACATTTCATGTTGAAACCTTGAGTACACTCACATGAAATTCCCAAAATGATGGCTGGACATTGGCATTGGAACAAAAAACTAGTAAACTAACCGTATAGTGACACAAAGTGTCCTTGGAAGTCAACAAACCGCTTACTGAATTCTGaaagagacttttttttgaTTTTGCATGTGTTCATCTTGAGGGTGAAAGACAAGTGAGAGCTTTTAAAGCAGCCTGAATGATCTTTTTTATTGAGAATGCCGGCACAGAAAAGGTTGGTGCATGTGGACTGTGCACTACTTTGACCATGAACGTAGACCAACTGGCAGAAGCTCCTCAGTAGCGATAGTGGTCTGGTTTGAAAGGACCCTCGAGAGGAATGCCCAGGTATTTGGCTTGCTTATCTTGGGCAGGAAGTACACACCAACTGTGTATTTGCTAGTATTGGTCCAGAGCTCAATCTGGGCAAGGACTTGATTGGAAAAGGAGTTGCTCATAACAAAGCTGGGGTGACCCATCGCACATCCCAGGTTCACAAGTCGCCCTTCAGCCAATACAATAACATGGCGTCCATTCTTCAAGAGGTAACGGTCAACCTGGTGAGGGAGAAGAGCAGAATTATGAAAGGATCCAAACAGCGTATActgattttacagttttttgtgTTGTAGTCCCCCACAGAGGCCAATTTTTGAAGGTTCATTAAACCATCCACAATACAAACCTTTCAATTTTGATTACTGAAAAACTATGCTAAAAGTCCAGAATAGACTGACTAATGTCAGtatatatttaatgcattagTGTCTCAAAACTACCAGATCAAGGTTAAGATGtgtcctttttaaaaatacatttttaaaaattattggaGCAAGTGTTATGAGGAATTCACACTGTAATAATATACAAGATCACAGCAGCACCAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26266 lncRNA upstream 84 5435766 ~ 5437469 (+) True G22032
TU26208 lncRNA upstream 102689 5334648 ~ 5334864 (+) True G21982
TU26199 lncRNA upstream 107268 5329895 ~ 5330285 (+) True G21973
TU26152 lncRNA upstream 179726 5257602 ~ 5257827 (+) True G21928
TU26126 lncRNA upstream 227436 5209865 ~ 5210117 (+) True G21903
TU26267 lncRNA downstream 8519 5452363 ~ 5463156 (+) False G22033
TU26276 lncRNA downstream 23422 5467266 ~ 5467481 (+) True G22036
TU26287 lncRNA downstream 49878 5493722 ~ 5552971 (+) False mych
XR_004579880.1 lncRNA downstream 51081 5494925 ~ 5500908 (+) True LOC117599465
TU26261 lncRNA downstream 57801 5501645 ~ 5503231 (+) True atp5f1e
XM_034313879.1 mRNA upstream 181574 5239845 ~ 5255979 (+) True nhej1
XM_026918678.2 mRNA upstream 181574 5239851 ~ 5255979 (+) False nhej1
XM_034313875.1 mRNA upstream 181574 5240319 ~ 5255979 (+) False nhej1
XM_026920371.2 mRNA upstream 283126 5140401 ~ 5154427 (+) True LOC113530419
XM_026920338.2 mRNA upstream 309957 5122721 ~ 5127596 (+) True wbp4
XM_034313088.1 mRNA downstream 32906 5476750 ~ 5489524 (+) True chmp4ba
XM_026917112.2 mRNA downstream 32912 5476756 ~ 5489524 (+) False chmp4ba
XM_026917125.2 mRNA downstream 57808 5501652 ~ 5502394 (+) False atp5f1e
XM_034312823.1 mRNA downstream 79080 5522924 ~ 5538437 (+) False ergic3
XM_026915801.2 mRNA downstream 79081 5522925 ~ 5538437 (+) True ergic3
TU26124 other upstream 228689 5208346 ~ 5208864 (+) True G21901
TU26030 other upstream 348975 5088134 ~ 5088578 (+) True G21835
XR_004579614.1 other upstream 677908 4754266 ~ 4759645 (+) True spega
XR_003404681.1 other upstream 777430 4660009 ~ 4660123 (+) True LOC113545978
trnah-gug_1 other upstream 1085805 4351677 ~ 4351748 (+) True trnah-gug_1
XR_003402786.2 other downstream 273686 5717530 ~ 5753104 (+) False rbl1
TU28587 other downstream 4007081 9450925 ~ 9454462 (+) False hmga1b
TU28588 other downstream 4007081 9450925 ~ 9454462 (+) True hmga1b
XR_004577034.1 other downstream 4148097 9591941 ~ 9596854 (+) False LOC113532547
TU28879 other downstream 4451401 9895245 ~ 9907171 (+) False LOC113530691

Expression Profile