RNA id: XM_026912152.2


Basic Information

Item Value
RNA id XM_026912152.2
length 2052
RNA type mRNA
GC content 0.46
exon number 3
gene id mych
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 5493722 ~ 5552974 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATCCCTTCAGCGCCCCACCCACTGCCTCTGCGCGCCGCGTGCTCCTGTGGCATGGGGCTTCGCAAATTTACGTTGTTTTAACAAAGTCTTTTTTTGTGCATTCATTTCGCTTTGCCAGCTACAGCTCGCCGATAACGGGTGTTGCTTACATTTACCGGCGTCACTGAAGGAAAAGGCTTCTGTAAACATGCTGCCGAGTCGCTCTCCGCCACACGACTGGCTTGGCGAGTCGGAACCGCTGCTGTTCGACGACGAGTTTTGCCAGAACCTAATCAAGGACCTGCAGGCGATCCCCACGCCGCCGCAGTCTCCGCCGATCAAGGCCGACCTCGTGTCCACCGTGGATCACTTCGAGCTGGTGTCGGAGCTTTTGCTCGAGGACAGCGACATTTTGAACTGGAACTGTGATTTAGGCGATGATCGTGCGAGGTATTCCGTCTCGGACGACTGCTTGTGGCCATGCGCCGGGGAGAAATCGGCTGAAGAGAAAATGTCCGTCCTTTCCACGAGTCCTCTGCTTTCGGATATCGATACGGAAATCTTCGCCGAGATCGTCGGTTCCACGCTGGATTGTGAGGCGCTGATGCAGAGCGATGACTTGATCCTGAGCACCCCCGAGCAGAGCGAGACCTCCTCCGACTACGGCTCACTGTCTGCGGCCGGAGAATCATCCAGCGATTCCGAGGAGGAGattgatgtggtgactgtgCGCCGCTCCAACACGTTCACTCGCTCACAGCAGCAGAAGGATGATGGCAGGCGTGAACAGCAGCAGGCACTGAAACGCCGTCACCTTGAGATCCAACAGCAACACAACTACGCCGCTCCTCGGCCCGCCTCACCCCCGCCCCCTTCGCTGAGTGTAAAACGTGCCCGCGGAAATATGAGACACTTCACCTCCCGCCACGCCTGCGACCTGGAGGACGATGAGGAGCGCCGCAGGACCCATAATGTTATGGAGCGACAGCGACGCAATGAGTTGAAGAACTGCTTCCTACGTCTGCGTGACCATGTGCCCGAGCTGTCGAACAACGACAAAGCATCCAAGGTGATGATACTAAAACGTGCTAAGGAGAGCATCCGCAACATGGAATCAGAGGGACAGAGGCTCAGTCAAAAGagagacaggctgagagagaaacaagaacAGCTCAAGGCCAGATTGGAGCAGCTCAAAAGGCTTTGAGGCTTCTGAAGACCATTTTGGGACTAGATACAGCTGGAGTACTGTTTGGGGCATGGCCAGCATTCACAGGCTGTCAGAGTCACAGCACTATTTACTGACTGTTCATCTCTAAGGAGATGGctaggtttctttttttattttagtttatgtAAAATTCCTTGTGGAAATATGCATCTTCAGTGTAAAAGTTGTTCTCAGAGTAGTTCTTTAAAGCTATGCCAAAATTTTTAGTCTtaaaatgagaatgaaaattGTATTTTCTATGCAATTTTATGTTGTTTACCTTAACCCTTTGCCAGTCTAAATCATCATTAATCTGTATAAATTTATAATCATTGAACATCTTAACATcttaacaacacacacacacacacacacacacaccatcattgaAAATGATCATGTGCTACTGATGTATGATTTTGGGCTGGATCCAAAAATGGTCAGATTTCTGGGGATGAATGTGATGTTTGTAAATGGTTGTGTTTGCTTTACTGGTAAGATGTTGAtacttgttctaatacagtCTAGGCATTTATATACTGGAAAGACAAGACCAGTTGGTTGACATTTGCATTATCAGTTGTACTTTGGAGTGTCATTCAAAAAATGAGTGTTCATATTTGAATCTCATTTTGTTGTGtgtcaaatataatatttttattctttgtcttaTCTACCTCTGCCAAGGAGActgggattattattattattgccttcATAATGGCAACTGTATAGAAGTCAGGTATTTTTGTCAGTTTCTTAATTATGTATGATAAATTATTTAGGTGTTATTTTGTTTGCAGAATTGAAGGTTTGTTCTTTTTAGCAGCACTTTTTATACTTCTATTAAACAGTAGACAATA

Function

GO:

id name namespace
GO:0014032 neural crest cell development biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26261 lncRNA upstream 46609 5501645 ~ 5503231 (+) True atp5f1e
XR_004579880.1 lncRNA upstream 48932 5494925 ~ 5500908 (+) True LOC117599465
TU26276 lncRNA upstream 82359 5467266 ~ 5467481 (+) True G22036
TU26269 lncRNA upstream 86684 5437553 ~ 5463156 (+) True G22033
TU26352 lncRNA downstream 147754 5700728 ~ 5700976 (+) True G22097
TU26366 lncRNA downstream 155992 5708966 ~ 5709171 (+) True G22110
TU26387 lncRNA downstream 229332 5782306 ~ 5786459 (+) True G22123
TU26327 lncRNA downstream 240110 5793084 ~ 5794691 (+) True G22072
TU26390 lncRNA downstream 246129 5799103 ~ 5800012 (+) True G22126
XM_034312823.1 mRNA upstream 11403 5522924 ~ 5538437 (+) False ergic3
XM_026915801.2 mRNA upstream 11403 5522925 ~ 5538437 (+) True ergic3
XM_026915809.2 mRNA upstream 11403 5522925 ~ 5538437 (+) False ergic3
XM_026917125.2 mRNA upstream 47446 5501652 ~ 5502394 (+) False atp5f1e
XM_034313088.1 mRNA upstream 60316 5476750 ~ 5489524 (+) True chmp4ba
XM_026918775.2 mRNA downstream 127092 5680066 ~ 5700669 (+) True si:dkey-6e2.2
XM_026913686.2 mRNA downstream 164563 5717537 ~ 5756688 (+) True rbl1
XM_034298497.1 mRNA downstream 336607 5889581 ~ 5948452 (+) True ripor3
XM_026937631.2 mRNA downstream 415224 5968198 ~ 5976002 (+) True tmem74b
XM_034310334.1 mRNA downstream 483740 6036714 ~ 6049905 (+) True abraa
TU26124 other upstream 340976 5208346 ~ 5208864 (+) True G21901
TU26030 other upstream 461262 5088134 ~ 5088578 (+) True G21835
XR_004579614.1 other upstream 790195 4754266 ~ 4759645 (+) True spega
XR_003404681.1 other upstream 889717 4660009 ~ 4660123 (+) True LOC113545978
trnah-gug_1 other upstream 1198092 4351677 ~ 4351748 (+) True trnah-gug_1
XR_003402786.2 other downstream 164556 5717530 ~ 5753104 (+) False rbl1
TU28587 other downstream 3897951 9450925 ~ 9454462 (+) False hmga1b
TU28588 other downstream 3897951 9450925 ~ 9454462 (+) True hmga1b
XR_004577034.1 other downstream 4038967 9591941 ~ 9596854 (+) False LOC113532547
TU28879 other downstream 4342271 9895245 ~ 9907171 (+) False LOC113530691

Expression Profile