Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU26298 |
| length | 479 |
| lncRNA type | sense_over |
| GC content | 0.39 |
| exon number | 2 |
| gene id | G22054 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047596.1 |
| NCBI id | CM018542.1 |
| chromosome length | 35203048 |
| location | 5548476 ~ 5610231 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU26261 | lncRNA | upstream | 45245 | 5501645 ~ 5503231 (+) | True | atp5f1e |
| XR_004579880.1 | lncRNA | upstream | 47568 | 5494925 ~ 5500908 (+) | True | LOC117599465 |
| TU26276 | lncRNA | upstream | 80995 | 5467266 ~ 5467481 (+) | True | G22036 |
| TU26269 | lncRNA | upstream | 85320 | 5437553 ~ 5463156 (+) | True | G22033 |
| TU26352 | lncRNA | downstream | 90497 | 5700728 ~ 5700976 (+) | True | G22097 |
| TU26366 | lncRNA | downstream | 98735 | 5708966 ~ 5709171 (+) | True | G22110 |
| TU26387 | lncRNA | downstream | 172075 | 5782306 ~ 5786459 (+) | True | G22123 |
| TU26327 | lncRNA | downstream | 182853 | 5793084 ~ 5794691 (+) | True | G22072 |
| TU26390 | lncRNA | downstream | 188872 | 5799103 ~ 5800012 (+) | True | G22126 |
| XM_034312823.1 | mRNA | upstream | 10039 | 5522924 ~ 5538437 (+) | False | ergic3 |
| XM_026915801.2 | mRNA | upstream | 10039 | 5522925 ~ 5538437 (+) | True | ergic3 |
| XM_026915809.2 | mRNA | upstream | 10039 | 5522925 ~ 5538437 (+) | False | ergic3 |
| XM_026917125.2 | mRNA | upstream | 46082 | 5501652 ~ 5502394 (+) | False | atp5f1e |
| XM_034313088.1 | mRNA | upstream | 58952 | 5476750 ~ 5489524 (+) | True | chmp4ba |
| XM_026918775.2 | mRNA | downstream | 69835 | 5680066 ~ 5700669 (+) | True | si:dkey-6e2.2 |
| XM_026913686.2 | mRNA | downstream | 107306 | 5717537 ~ 5756688 (+) | True | rbl1 |
| XM_034298497.1 | mRNA | downstream | 279350 | 5889581 ~ 5948452 (+) | True | ripor3 |
| XM_026937631.2 | mRNA | downstream | 357967 | 5968198 ~ 5976002 (+) | True | tmem74b |
| XM_034310334.1 | mRNA | downstream | 426483 | 6036714 ~ 6049905 (+) | True | abraa |
| TU26124 | other | upstream | 339612 | 5208346 ~ 5208864 (+) | True | G21901 |
| TU26030 | other | upstream | 459898 | 5088134 ~ 5088578 (+) | True | G21835 |
| XR_004579614.1 | other | upstream | 788831 | 4754266 ~ 4759645 (+) | True | spega |
| XR_003404681.1 | other | upstream | 888353 | 4660009 ~ 4660123 (+) | True | LOC113545978 |
| trnah-gug_1 | other | upstream | 1196728 | 4351677 ~ 4351748 (+) | True | trnah-gug_1 |
| XR_003402786.2 | other | downstream | 107299 | 5717530 ~ 5753104 (+) | False | rbl1 |
| TU28587 | other | downstream | 3840694 | 9450925 ~ 9454462 (+) | False | hmga1b |
| TU28588 | other | downstream | 3840694 | 9450925 ~ 9454462 (+) | True | hmga1b |
| XR_004577034.1 | other | downstream | 3981710 | 9591941 ~ 9596854 (+) | False | LOC113532547 |
| TU28879 | other | downstream | 4285014 | 9895245 ~ 9907171 (+) | False | LOC113530691 |
