RNA id: TU26329


Basic Information

Item Value
RNA id TU26329
length 2232
lncRNA type inter_gene
GC content 0.56
exon number 1
gene id G22074
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 5814347 ~ 5816578 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCCTCAGTTTTCAGATCTCCGAACTCCTCAAGGAATGTGCTCTCTGAGGGAAACTGCACTGGCTCCAGGAAGTTGAGCAGACTGAAGAGCTCCTCCACAGAGTTCTGTAGAGGTGTACCTGTAAGGAGCACTTTATGCTCCTGaagagaggaggggaaaaatAGTGGCAAGATGAGTCAGCATTCTAAGAGCCGTGACTTTTCATAGGTGGCTGAATGCATCTGGgaagttttctcttttctgtacTTGTCACAAAGATATGCATTAATTTCTGACTAACGTCACTACAGTTTAGATACAGATTTTTGGATTGCATTATTTAAttgcaaatttttatttttttttagctttaaataaacacaaagccCCTGATAACATTACAATGCATCTTATCAATATGCATCGTGGTCAGTATTTAGGGAAGTATTAGTAGCAACTCCAGAATCCTGGCACCCCTGAGTAAAACATGTAAACGTAATTGTATAATCATTACagacaattattaaaaatttcagctcaaccagaaaaaagaaagaaactattTATAATTTCTCTaacaaaaatactttaaattttCTCTTAAAGCATCTGtggcaaaataatataaatttattcagCCCTGGGTTTTAATTGCTTTCACTCTTCAGAAACTCTGATGCTGcctttaaccatttttttttttagttccctTGTGGTATTAGTTAGTGGTgtgccttttttattttctcttcaaaTATGACTTTATGATAGGACATAATGAACATATATTTAGTTAGAAAGTTAATTTAATAATGCACAATCAAGTATTGTTTTTCCACTGCAATTTGTTCTACATGTCAGTGGTAGGGGACATACTGAAGAGGAATAAGgacaataaacaaaacacacactgaaaacttTACTGAATATCAGCTCAATATTTCACAATGTAGTCCTACTTTAGCAAACTTTGTGAAACAGCCACAGAGTTTAAAATGATTGTTTGAAAATCTCAGTGGATTAACAAACTCTATACGATCACAGTGGCAATGCATGCTTATAATAAACTTATACACTATAAGACTGCTGTTCTCTGCATCAAAATACTGCCAGGAAcgacttttatttttcttatttttcactCATTTCCTGTGGATGCAAGGCATAATGAATACCAGAGTAATGACTGCAGTATTTCAGTACTGGTGCCTCAAATAGTTAACTGTCAGATAATGGATATAAACTTTACATAAGCAGTTTTGTAGCAAAAATTGTGTAGACTGAGTGAGAATTGTTGATTTATGGCtgtttaaaaacacatgaacattTAGTAAAAGCCAACACTGATGGCACTCATAacttgaaaaatatattttttgaaacaattatatatttagaATGAAGTTTCTAGGTGAAAGTATAAGGATTTTACAGTAGAATGATTTGTTGAAACAGCTAATTCAGAGAATATACTCTCAACGCTAGAGTGGCGATGACATCACTCTAGCTTACCCCCATTAAAATAAATGGGGGAAGAAGTAAAGATGGATAGAAAGAGATGTATGAGTTCGATCTGTCTGTAATTCTCCATGACAGGCCCTGGTCTACCCAGGTTTGACCATGTTAATTTTGGTGATTGCTGCTTGAGAATTGAAtgaattacagcagcagctaaCTACGAAAAAGACAACTAGTCAAGCAGTCAAATACTTTTTTGAATTACTGAATGAATAGTAAAAATTAACAGTCGTGCAAGCCCTAGAGTGGAGGAGTAATCTAATATCGCTTTAAAAGAGTTCTCCAATTTTGCTAGATATTACAGGAAAATCTCCCCCATCTCCTTTAAGGGTGCCACAAATTCTGTCTGTAGACTACACACCAACTCTACTTCCATGACTGGctctatttctgtctttgttgttgttgttgagacCAAACACAATTTTGTAGAAAACAAATAGTATATcattaacatatttaaaaacagaGTTTACCTTGAACAGactaatggggaaaaaaataagcgTAGGAGGCTAATAAACAGACCAAGTTCATGAGTTTGAGTCCTTCCAGCAGTTTACAGTTACGATTCTTCAGTCGATGGGCTTCGTCAATCACCACACAGCGCCAATTAACCTTTTTCAGTTCAGGGCAATCAGCCATGATCATCTCAAATGTGGTGATTACACCATGAAACTTAAACAGGCCAGGCATTATGTTTCCCTGCAAAGAAGTAAACagaggcaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26322 lncRNA upstream 3312 5810757 ~ 5811035 (+) True G22070
TU26394 lncRNA upstream 6680 5804943 ~ 5807667 (+) True G22130
TU26390 lncRNA upstream 14335 5799103 ~ 5800012 (+) True G22126
TU26327 lncRNA upstream 19656 5793084 ~ 5794691 (+) True G22072
TU26387 lncRNA upstream 27888 5782306 ~ 5786459 (+) True G22123
TU26331 lncRNA downstream 8538 5825116 ~ 5826948 (+) True G22076
TU26395 lncRNA downstream 12720 5829298 ~ 5829650 (+) True G22131
TU26397 lncRNA downstream 15401 5831979 ~ 5832212 (+) True G22133
TU26391 lncRNA downstream 23856 5840434 ~ 5842906 (+) True G22127
TU26389 lncRNA downstream 26579 5843157 ~ 5850947 (+) True G22125
XM_026913686.2 mRNA upstream 57659 5717537 ~ 5756688 (+) True rbl1
XM_026918775.2 mRNA upstream 113678 5680066 ~ 5700669 (+) True si:dkey-6e2.2
XM_026912152.2 mRNA upstream 261373 5549840 ~ 5552974 (+) False mych
XM_034310062.1 mRNA upstream 261373 5550065 ~ 5552974 (+) True mych
XM_026915809.2 mRNA upstream 275910 5522925 ~ 5538437 (+) False ergic3
XM_034298497.1 mRNA downstream 73003 5889581 ~ 5948452 (+) True ripor3
XM_026937631.2 mRNA downstream 151620 5968198 ~ 5976002 (+) True tmem74b
XM_034310334.1 mRNA downstream 220136 6036714 ~ 6049905 (+) True abraa
XM_026923429.2 mRNA downstream 220136 6036714 ~ 6049905 (+) False abraa
XM_026923599.2 mRNA downstream 220136 6036714 ~ 6049905 (+) False abraa
XR_003402786.2 other upstream 61243 5717530 ~ 5753104 (+) False rbl1
TU26124 other upstream 605483 5208346 ~ 5208864 (+) True G21901
TU26030 other upstream 725769 5088134 ~ 5088578 (+) True G21835
XR_004579614.1 other upstream 1054702 4754266 ~ 4759645 (+) True spega
XR_003404681.1 other upstream 1154224 4660009 ~ 4660123 (+) True LOC113545978
TU28587 other downstream 3634347 9450925 ~ 9454462 (+) False hmga1b
TU28588 other downstream 3634347 9450925 ~ 9454462 (+) True hmga1b
XR_004577034.1 other downstream 3775363 9591941 ~ 9596854 (+) False LOC113532547
TU28879 other downstream 4078667 9895245 ~ 9907171 (+) False LOC113530691
TU29055 other downstream 4381388 10197966 ~ 10198455 (+) True G24500

Expression Profile