RNA id: TU26387


Basic Information

Item Value
RNA id TU26387
length 4005
lncRNA type inter_gene
GC content 0.39
exon number 5
gene id G22123
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 5782306 ~ 5786459 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctcccatctcatatttttttttttccatcaccatgtccccTTAGCGGCTCTGTAAAAACATACCTCCAAGAGAACTGTCATGTTTCACTGTGTCCTCTGAGAAAGAGTTTGCCTGCTTTGAAGAAAGCACATTGAATGTTACAACATCAAAATTTATGCCGTTTACACtacaattttccaaaaatatcgtTCACCTGACATTTAATCATCacctttttctcttctttgtcCTCTATTCCCTCTGGCTTACCGTCTACTTCTTCTTTTATATCATTGCTCTTGATTACACTGCAAAACATTTAATCAAATAAAGCCTATTTTGGCAGCTACAACAAATTACAAAGTATGAAGTCAATCAAATTcaaccaaaataaaatatgttcataTGAATgactttcttatttcttatgtTTAAGCTGTAATGAATTGTTAAAAACAGCTGGCCACCTTAAAACACAACCCCTACTATTGCTGTCAAGCACAATTTACCTATCTGTTACATCTGGCGCAGCCTCAGCACCACCCTGCTCTGCCGTAAGTGCGATGACATCTGGCATGCCCACCCGCTCTAAGAAACAGAGCTGAGGATCTGCGCGCATGGCATTGTACCGCTCATACCCTACACAATGACATACACCAGTTAAAGTCaacataaaaatgattaatgtaaaaataaaatgtactagtTAATGCCCATCCTTCAGTAGTTTCATCCTACCGTGCTTGTGTACCCCAATAAGCAGAGATTTATCTGCCTCAGCATCCCACCAACCAGTAGGGATTTCCATGTAGTCAACTTCCGGCAGGGCCACCTCTAGTTTGCTACCAAACGCACACAACTCATGagttaagcaataaaaaaaaaagaaaaagcaaacagtGCATCACAACCAGTTAGTAAAAGCATAGCTGAGCTACTGCTTAGACTAAAGTTTTTTTTGGGTGAACCACTGAGAGTTGACACAGTTGCTTCACAAAATcttttaatgtagaaaaaatAGTAGGCTGGCAAACACAGTACCTGGCCGAGACTCCTTCTAGAGCCTGATTGGCAGCCTCCCCGAGTACCTCTGCTTTAAGGTAATAGAGCATTCGCACCCTCAGCAGCACCCTATACACAGACATAGCGTTGGTTTGCAGTTTAACATCTTTGGTCATGCTGGGGTGTTACCATATATATCCACACCTACACTGCGGattctgtttttcagtcttcatAATTGAAAGTATTCTTCAGTTATCCCCAGTAAAGATTTTTCATGGCCTGCAAATTTGTTTGCTATTGctaagcttaataataataatgataataataataataataatgataataattaataataataataataataatagtaataataattttctttactatgtatcccatccagggtgggTTCCTGCCTCGCTCACAGTGCTCCCAGGATAAGCTCTGTACCCACTGTGacactgatcaggataaagcagttattgaagatgaatgaatgatgtctTAGTCCAGTTACTTTAATATAAGTTCAAATGTACTGCAACACAGAAGCAAATCAATAAAGTGTGTAACTAGGACTGCActgtacagtcatgggaaaaagaaagtacaccctccttcaattctatgtttttatttatcaggacataaataacaattgtgtggtcttcaccaacttctataaaaatacaaataacctcaggtgacaaaaacaacaacaaaaaaacacaaccgaTTTCAAtgtgtagtcatttttcccgcaaagtaaaccaacattcagaagccagatgggaaaaaataagtacactcttcctacttccacaatcactaagagagtaattagcagtcAGTTGTTACTAATAAATTGTACatgattagttaatcatcaagaagtgtgactacctctataaaagcagaacttttggcagtttgttgctctggagcactcaggtgtgtgtctacatcatgccaaaaagaaaggacatcagccatgacctaagagaagcaactgttgctgCTTCTACattgagaaggattgtttataaatggagagccttcaagacagttgccagtTTCCTAGGAGtgagcaaattcagtccaacgTCAGACCATTAAGAGAGATATAAacaaaaacccaagagctatatcatgtgacctacaggcctctgtaagcacattaaatgttcatGACGGCAtgatcagaaaaagactgaacaagaatggctttcatggaagggtggctagtaAAAAGCATCTTCTCTCCGAAAATAATATAGCAGCATGACTTAGGTTTACAAAATTGCATcagaacaaacaacaaaagttctggaaccataTCCTTTGGACTAATGAGACCACGGCGGAGATGTCTGTGGTCACACGCCGTGTTTGGTTTTCGCCAAACATGGCGCTGTATGTGATGATCAAACACCCCATACCAGctgtaaagcatggtggtggaggggtgatgatttgggcttgttttgcagccacaggacctgggaaacttgcagtcattgagacgatcttacacacacacacacacacacacacacacacacacacacagtagtgaacacacacacacactgtgaacacacacccggagcagtgggcagcggagcagttggggtttctgaatgttggcttactctttttggaaaaaatgacaacatattgaaatctgttgtgatttttgttgtcacctgaagttacttgtttgtttatagaacttggggaggaccacacaattgttatttaggtcctgataaataaaaacacagaactgaAGGAGGATTTCCTTTCTTTATCCCATGACTGCATATACAATCATATACAGACAGCGCCAGAATTaccacccttggtaaagatagGCAAAAAAGCAAATgcctttgtggttaattagcttcaCCTCACACTGAAATATGAGAGAAACCTAaccctaacaaaaaaaaaggatagatGCAAGTCATGACCAAGTCTCCGAATCTACATGCCAGTAAATTATTTTGATAGCATGCAATAAGAAAgccctttcttttctttgtcctATCTAACCAATCGCATTTTCTTGCCTGTATCCTAAACCTTTTTGATTTTAATCCGTTCAACCATTTCAAATATAACATCAACACAGAAAGCAGTGTTTTGATGTGGCTCACTTGTTACAGTGCTGTTTGAGGTGTTTCTTGTAGCTGTCGTCCTGGAGTACTACTTCTGGGTTACAGTGAACTAGCCAGTCAGCATTTTTTAGCTCAGGAGGACTTAACTGGTTCTTAAGTTTCTTACCCTTACGGCCCCGGGGTACAGGAACAGACAGTCCTGCACAGAAAGAAAATCTAAATGAAAATTCAGTGACAACATAtcagtgtttaataatattCTGGTGAGCATGGAAATGGCAAAGTTTTACCATTCAAGTATTACTGGCACCCTTGATGACTGATTAAAAAGATTAACACAAGCAATACTGCATTTTCTCTTAGTCCACACAGAACATTTTCTCTTAGTCCACACAGAACATTTTCTCTTAGTCCACGCAGAACATTTTCTCTTAGTCCACGCAGAACATTTTCTCTTAGTCCAcgcagaacattttaagctcctttatattcttatatagGTTTGTGCATATGGACTCCCCTCTCCCATTCAAACCACAGGTTTTCACAGGGTCAAATACAGAAACTGAGACAGTTAATGCAAAAATAGATTTTTCGGGCCGTAAAGTTACagcatattgtatcatattgttCCATACATGGCTCTACATTCAATACATTCAACAGACTGGATATTAAAGGTCGCTATTACCTGAGTGGTTATGGAGTGCTTGATTGTGCCCATCCTTGGTGGGTGTGATTAAGTCCCAGATGAAGCTCTTGATCTTGTCGTCACCTTTGTAGTGACGGACACAGTAGGCAAGCAGTGCTCTGCACAGCACTTCCATGTCTCTTTCTGTAAGGTGCCACTTAAAACGTCCGTGATTCAGTATGTCCTTCCAACGCCCCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26366 lncRNA upstream 73135 5708966 ~ 5709171 (+) True G22110
TU26352 lncRNA upstream 81330 5700728 ~ 5700976 (+) True G22097
TU26298 lncRNA upstream 172075 5548476 ~ 5610231 (+) True G22054
TU26287 lncRNA upstream 229335 5493722 ~ 5552971 (+) False mych
TU26327 lncRNA downstream 6625 5793084 ~ 5794691 (+) True G22072
TU26390 lncRNA downstream 12644 5799103 ~ 5800012 (+) True G22126
TU26394 lncRNA downstream 18484 5804943 ~ 5807667 (+) True G22130
TU26322 lncRNA downstream 24298 5810757 ~ 5811035 (+) True G22070
TU26329 lncRNA downstream 27888 5814347 ~ 5816578 (+) True G22074
XM_026913686.2 mRNA upstream 25618 5717537 ~ 5756688 (+) True rbl1
XM_026918775.2 mRNA upstream 81637 5680066 ~ 5700669 (+) True si:dkey-6e2.2
XM_026912152.2 mRNA upstream 229332 5549840 ~ 5552974 (+) False mych
XM_034310062.1 mRNA upstream 229332 5550065 ~ 5552974 (+) True mych
XM_026915801.2 mRNA upstream 243869 5522925 ~ 5538437 (+) True ergic3
XM_034298497.1 mRNA downstream 103122 5889581 ~ 5948452 (+) True ripor3
XM_026937631.2 mRNA downstream 181739 5968198 ~ 5976002 (+) True tmem74b
XM_034310334.1 mRNA downstream 250255 6036714 ~ 6049905 (+) True abraa
XM_026923429.2 mRNA downstream 250255 6036714 ~ 6049905 (+) False abraa
XM_026923599.2 mRNA downstream 250255 6036714 ~ 6049905 (+) False abraa
XR_003402786.2 other upstream 29202 5717530 ~ 5753104 (+) False rbl1
TU26124 other upstream 573442 5208346 ~ 5208864 (+) True G21901
TU26030 other upstream 693728 5088134 ~ 5088578 (+) True G21835
XR_004579614.1 other upstream 1022661 4754266 ~ 4759645 (+) True spega
XR_003404681.1 other upstream 1122183 4660009 ~ 4660123 (+) True LOC113545978
TU28587 other downstream 3664466 9450925 ~ 9454462 (+) False hmga1b
TU28588 other downstream 3664466 9450925 ~ 9454462 (+) True hmga1b
XR_004577034.1 other downstream 3805482 9591941 ~ 9596854 (+) False LOC113532547
TU28879 other downstream 4108786 9895245 ~ 9907171 (+) False LOC113530691
TU29055 other downstream 4411507 10197966 ~ 10198455 (+) True G24500

Expression Profile