RNA id: TU26394


Basic Information

Item Value
RNA id TU26394
length 2725
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G22130
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 5804943 ~ 5807667 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTTTAATACCCATGGGCTTTCTTTAAAATCTCTGTTGTCTTTGACCAGAATAACCAAATGGAACTGGGTTTGTACTGATTAGGCTAAGAACTATAATTATGACAGTTAGCTGGGACAGACCAAATGTTATAAGTTGAGGAGAACAAGGAACAAAGGGCAGAATGATCAAAGGAGTTTCATCCTAAGGGGTGACCACAGATCACCCTGCATGTCTCACCTCTGCTCATACAGCAGAAACCATAATCTGTAAATGTTTCCTGAACTTGTATGCTACTACTGAAATCAGCACACTGTTCACTATAGAGTATTTGTTAAAATGATAccaaacatgacagaaaaataGATTTGGAGATGTGGTGACCGCAAAATGCTCCTATCTTCTCCAAATCTCCAACTGTAATCCTAGGAGAAATTTTGTCTCTCTAACCATCCCTCTTGCTATGTGTGGGGTCAAAATTACCCTTTCATAAGAATTTCTAGGGAGTGAAAAATACTTGATGCctgaattttataaaaattgttataaattgttataaaaaagtctagaaaaagcccaaaatctaatcagttcatctgatAATTACAATGAATTCTATATAAATCGTAAACCAGGGCGctggacatagcaggtaatcttagggtcttaggcaagcatagGTTTGAAATACACctttgtcagtcagaggttactaagagtaacaatGTAGAGGTGTGAAGGCGATGTCCGACGCAGTAATAAGCTCTAGCTCCATCCCAACACAacatggcgatgtagcttacataAGGTTAAGGTCgttgaactgctggatgtccaggtggtgctctgaaaactatgtgggctttatagataaattggagtagttttgagggcaaggctggcctgttagggtggGATGGTATCCGTCCTACTTGGGAAggagctgctctcatttctttcaGCATAGCTCATAGTCTCAGAGCAGGCCTAGctaatcagtgacaatccagaggcaaggccagggagcagaccaATAGGCTAAACCGACCATCTGCTAGTTGCACTGAGACGTCACTCAGGTTCCATATTATATTGAGACTGTGTTTGTTCAccgagctaaaaaaaaaatgtagaaatactgaGAAAGTTTCTTTTAGTatcctaattaacataaaattaaatcatactgaatgtaccaccagcacctttgatctgaagctaggactgttaaatataaGATCTCTTAAGCACTTATTGTTAAAGAAACTATTaatgatcaggagtttaatgtactgtgcttaacagaaacatgaattaaaccaaatgagtatgtagcattaaatgaagttAGTCCGCCTGTGTCCATTCTAAATTCAGTAGGGTTTAATCAggatgtaataggacccactcataatgTTGGTCACAGTCCTGATCTAATAAAAAcctttggattaaatatagaaaatatagtcacatttccacagtctgaaatTATCCCTGATCATTACctaatctcatttaaaatgtgtcttagtcaAAATATATACACCTTGCCACATTACCACGTCAAACGTACATTCATGTCAGAGTTTTAactcccagagttatcaactatgattggatcactgtctgaccccacagaatttgatcaggcaactgaatgcttagagtcaatgCTTAGCTACACTCTCGATAATGTAGCTCTAACTCTGTAGACTGATATATACCTATATCAGATCAGCGATTAGAATGTTTTTCTCCCCTTCGAGAGAcagaactaatttcactaatttcctcatcaaaatcatcaacttgtgtactTTATCCCTTACCCACAGgtttcttcaaacagaaaataccagaaacaatcaaacctcttctaaaaataatcagttctttTCTTaccactggctatgtacctaaatccttaaactatcaaacccctgattaaaaaaacctaacctcaacccctgtcagctgtccaactataggccaatatcaaacctcccctttatctccaagatcctagaaaaggttgtagcacagcagctatgctcatacttacataggaataacattcatgaaatgtatcagtcaggatttaggcctcatcatagcacagagacagcgctggttaaagcagtaaatgacctactactggcctccgATTGGGTTTGTGTCTCCTtgtttgtgttgcttgaccttaatGCAGCTTTTGACCTCAATTCAGACACCACTGATCATACTAGTCTCCTTAAGAGACTAGAAAATGCTGGAGTTAAGAGAACAAAACACTCCtagctcaggtcttatttgactgatcattagatgtaaatggtgacttctttACATATACTAAGATAAAGTTTAGTGTCCGCAAgtctctgttttaggcccactgcttttttctttatatatgctacctctgggtaaaatgattcgtaaacatggtattagcttcccctgttacgctgatgacacacagttgtatgtttcagcaaagccagatgacagacaccagcttaataaagttgaggaatgtgtaaaggacattagacactggatgctcattaacttccttctacttaattctgacaagacaaaACTACTTGCACTAgaaccacatgcagttagaagtaagctttcttgaattgcactttttgactacaTAGCACATtacagaagggaattatttatatatttatatattatttataatcgcactatccagtgtcacccagtgttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26390 lncRNA upstream 4931 5799103 ~ 5800012 (+) True G22126
TU26327 lncRNA upstream 10252 5793084 ~ 5794691 (+) True G22072
TU26387 lncRNA upstream 18484 5782306 ~ 5786459 (+) True G22123
TU26366 lncRNA upstream 95772 5708966 ~ 5709171 (+) True G22110
TU26352 lncRNA upstream 103967 5700728 ~ 5700976 (+) True G22097
TU26322 lncRNA downstream 3090 5810757 ~ 5811035 (+) True G22070
TU26329 lncRNA downstream 6680 5814347 ~ 5816578 (+) True G22074
TU26331 lncRNA downstream 17449 5825116 ~ 5826948 (+) True G22076
TU26395 lncRNA downstream 21631 5829298 ~ 5829650 (+) True G22131
TU26397 lncRNA downstream 24312 5831979 ~ 5832212 (+) True G22133
XM_026913686.2 mRNA upstream 48255 5717537 ~ 5756688 (+) True rbl1
XM_026918775.2 mRNA upstream 104274 5680066 ~ 5700669 (+) True si:dkey-6e2.2
XM_026912152.2 mRNA upstream 251969 5549840 ~ 5552974 (+) False mych
XM_034310062.1 mRNA upstream 251969 5550065 ~ 5552974 (+) True mych
XM_026915809.2 mRNA upstream 266506 5522925 ~ 5538437 (+) False ergic3
XM_034298497.1 mRNA downstream 81914 5889581 ~ 5948452 (+) True ripor3
XM_026937631.2 mRNA downstream 160531 5968198 ~ 5976002 (+) True tmem74b
XM_034310334.1 mRNA downstream 229047 6036714 ~ 6049905 (+) True abraa
XM_026923429.2 mRNA downstream 229047 6036714 ~ 6049905 (+) False abraa
XM_026923599.2 mRNA downstream 229047 6036714 ~ 6049905 (+) False abraa
XR_003402786.2 other upstream 51839 5717530 ~ 5753104 (+) False rbl1
TU26124 other upstream 596079 5208346 ~ 5208864 (+) True G21901
TU26030 other upstream 716365 5088134 ~ 5088578 (+) True G21835
XR_004579614.1 other upstream 1045298 4754266 ~ 4759645 (+) True spega
XR_003404681.1 other upstream 1144820 4660009 ~ 4660123 (+) True LOC113545978
TU28587 other downstream 3643258 9450925 ~ 9454462 (+) False hmga1b
TU28588 other downstream 3643258 9450925 ~ 9454462 (+) True hmga1b
XR_004577034.1 other downstream 3784274 9591941 ~ 9596854 (+) False LOC113532547
TU28879 other downstream 4087578 9895245 ~ 9907171 (+) False LOC113530691
TU29055 other downstream 4390299 10197966 ~ 10198455 (+) True G24500

Expression Profile