RNA id: XM_026937631.2


Basic Information

Item Value
RNA id XM_026937631.2
length 4452
RNA type mRNA
GC content 0.37
exon number 2
gene id tmem74b
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 5968198 ~ 5976002 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGGGCGTAACGCGTCCTTAACGGCACCGCTGACCCGCTCTCTGAATTATAGGTTACATTAAAATTGCTACGTGGGTAATTGTGGCTTTGAATCCACTAAAGTGTCGCTTTTTCAACGTATATTGGCTAAAAAGCGCCAATTTAATATGTTGTTTTGCGCATGGTCACTTCTTCCGTGAGGTTTCCCTCGCAACAAGCACCATTCTTTAACAATGCTATGTGATTGGCGCTCATCAGCACCTGAAGCCACAACAAAAAGCCCTTTGTTTAATCATCATGAGCATACAAACTGAGTGTGgatggagtgtgtgaatggCGTGGAGCTCCATGAGCTCAGGCCCTCAGGACATGGCATCGAAAACACTTCCTTCtgtgatgaggaagaggaagccCGGGTATGTGTTGTTAATTCCAGGACGAATCAACATTTTCCCTCTCATGGTGGAGGTGGAATTAGTCCTCAGATTCTTCAAGGAGATGTTCAGTCAGACAAAGAACAAGAAACAGTGTATGAAGAACGTTCTGTGGATTACAGCTTCATGTTGGCATTGGTATTCCTCGTCAGTGGAATTGCTTTAGTTGTAATTGCCTACGCCATACCAAGGGAGGCTCAAATCAATCCAGACCAGGTTACAGCACGTCAGATGGAAAAGTTGGAGATGTACTATGCACAGCTCGGCTCACACCTTGATAAGTGCATCATTGCTGGACTTGGCTTACTTACTCTTGGTGGGATGCTCTTGTCCATTCTGCTGATGGTTTCTCTATGCAAAGGTGAGCTTTATCACCGCAGAAGTTTTGCCATCTTAAGAAGACCTATGAAGTCGTATGGCTCCATAAACATGAGGATGGGACAGTTAGCATCCGGAAATGGAAGAGAACCTATCATGGAGTGTGATTCAAATACAGACCCTCATGATGCATTGAGTGCTGAAAGAATGCAACATCTAAGGCAAACTCAGTAGCACAAGCTTACAGTGCCTGCCACTCAAATAGCCAAATCCTAAATGGCTCCTTATTTCCAATAGACTGTAAGTACACTATGAACATACTGTACGTACATGAAGAGACACTTTATGATATAAAAGGTACCAAATATTGGCTTCTGCATTCTATAAAGTGATGCGTCTTGCCTAATTTGGAAGGGTTAAAGGCATATAAGATCATCCTGGAAGAGAATATAAGAACACTGAATATATGAAACAGTCCAGGAGTGCCATGGCCTTAcagagattttttcccccttcttctAACACACAAAATTCAGCATATGAAAGAACATAAGAACATAAAGTAATTGGTAAATTATTTGAAATAGGTTTCaactaaattaaattagaaGGATAAACTCTGCATTGCTGTGGTCCTGAAAGACAGCAGTCTGATACCCCTCTGATACCCCTCCTGGAAGACAGTAGTCTCATACGCCACAACAACATCGCCTTAAACCATTATATTCGGTGGACTAGACTTGTGAATTAGGATAGGATTTTCTTATTTAGAAGTTGTGGGGTTTAATTTGTTGTAGTGAAGCCTTTAATATATACAGCACTGCATATGAATGTAACCAGTTGGAGCTTTTGCATTATACAGTGTCTTATACTGATACACAGATTTTATGTATAGGAAATACATAAATGACTTAAACATAGTATATTCTACAAAACAGTTATCACAAAAGTCACAATATCCACACTTATTATACAAGTTTACTATACATATAGAAGAATACATTCTGAAAATTATATAGTTATGACCGGCTTTTGAATAGCGATATATAGTAACTTCTTGACATTATGGAGACTTAAGTAAAAGAGAAATAGCCAGTTATTTTTGGCATTAAGAACAGGGGATACACAAAATTGAGtcaataatagaaaataattatgACCAGCTTTGAGACAGGGGTATTTTATTtagcacacacaaaatatagagatattttaacaatggccaaagcatttttttatttaattcttgccAAGATAGTTTCTATTTTTAGAACTACATCAAGGCCATGTTCAGTATAAGCAGAATGGTATAAAAAGCAGTTGTTGTAACAAAGTTACATATAAGGAGCATTGTATGATAATCTGATACTCTGATATTTGATCAATTTAAAAGAGTGATCACATTTGCAATACGGTGCTGTAGAAAGTAGGCACAAAAATGGTACAATCAAGAGAGGTAGAAATTTAAAAGAGAATATATAGTTGATATTTAGATTCTATGAGGCAGCACATCTAAGTTGTAGTTTATAATCATGGACAAGGTTTAAGAAGCACAGGATTGTCCAAGGACATCTCTGATCTGAAGCTGAAATGAGGACTCTTTTTCAGGTGCTTGAATTAATAAATTGACAAATCAGAAATCAAACCTGCAAACAGAAAGATCCCTCTTGAAATAGCACAGCAAAACCTTTTTTAATGTTCAAAAACTAAACCTTTcgtataatttatttatttaacaaagcatTCTCGGTGATGCCATCACCAAAAGGATGGTTTCTCTTGGAGCAACCATAAAGGATGCTCAAAGAGAAAACATCAGCTCTGAACTGTCCAGGTTAGGACAATTTAATCAGATAGAAAGCCTGACATGGTTTATTTCCTTggataatattttaaatcaaaaataCTCTGTCTCCACTTGAGCTCACCTTTTCCAGTGTTTTATGTAATCTGATCATGAGATCCTGTTTCTCCTTTTCAGCCACAGAAGAGACTACAGCATTTTTGTCATTGTACTTTGAACTAGGGATGTGATGTGATGCTTATATGTTGTTATGCTGTgataatgaaatatgaataaatatgctTATTAAAGAGTAAATACCAAGTGAAAAATATAAGACAATTGTATATCTACATTGTtttgataaattgctgtgaGATGCATTTAACACATCTGTTTAAAAATCTTCTAGTCATTCCCCTGACCAAGTAGTTCAACAGTCATTGCCACTGTTACATTTTCTTTGATGTCAtactattaaaaaatgtaaaatactaAATAGATACCATGAAATACATAATCATATTACTATGTTGTGCAGTTATCAGACCATGAATGTTTGACATCCAATTCAACATTCAACTCAAATATAGTAATGGCACATCTAAGAGCTAAAGGTCAGTAgtcttaaaatgaaaacatggtAATAGGGAGAGAGTGTGTTGGTTTGAAAAGAGATTGCTTCTACAGCTTATATCAGAAAAAACTATCACCTTatgtttcacattttctgtATGGCACAGAAAACTGATTATTTTAGGTGTCATTTGTCATTTATAACAGTCTccaaaataaatatgtgaatgtaCAGATAATTAATATCAAACTTTATACATGGTAGagtaacatttataaaagtagTTAACCAGCGtataatataaacatgattttttttttgtttacatttcaaaGACAACTGTAATGTTCACAAGATGACATTTTAACACATTGTGTGGTGTATTTTAGAGATTATACTGATTAATATAAATCAATGTATGTGTAGTAATTacattcctatttttttttttttgtttccaatAATTGTGAATAACTGTCAGTTTATATCAATGAATAGATGTGCATTTGAATGTTTCTACTAATGAGAAATGTATCTGATGTTTTataaagagagaggaagtaTCTTCACTATACCATAAAATCACTGCTATACAGATATAATTTGGGTGATGGACCATCAGCACAGCATTAACACTCAGTAGAAGCATGTCTGTGTGTAGCTCAAAGCAGTAATGCTGGAGTTTTTCACTGTTCTATTTTGTTACTGGCTACTTTATTAGGCACTTTTAACTTGTTGGGACACGTCGTCCTCTAGCCCTTCATCACATTACCATTGCCAGACCATGTCAGTGCCATTAATGTGCTAATAATGGttcaccacccaaataatattaGGCCAGCACTTGTCCTGTTGTGGTCCCTGTCCACCCCATCGGGATGGAAGAGTGTGGCTCACACTCAACTCACAAGTTATGCACAGCAACAAATGGGCTACATTTATACACAAGTAAGTTAAATGTACCAGATAAACTGGCCACTGAGTGTACTTTTCTCAAGGCTAGAGGTacaaaaaagccaaaaagtCTGGGGTGACAAGGCAAACTCACTGACCACTGTAataggaacaactgtacacaTGCCCATTCATGTAACTATCTAGTCACCAATCCTGGCAGCACAGTGCATACAATCATACAGATGGTCAAGAACTTCAGCttttgttcacatcaaacatcagaatgggggaaatgtgatcacagtgactttgactgtgacaTGTTTGTGGTGCCAGACAGACTGGACTATTTCAAAAATTGctcatctgggattttcacatatgacatgctttgttgatgagagagatcaggggagaatggtcagacttgtttgagctgacagaaaggctatgataaccactctt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26524 lncRNA upstream 3803 5897611 ~ 5964395 (+) False G22244
TU26523 lncRNA upstream 3803 5956821 ~ 5964395 (+) True G22244
TU26406 lncRNA upstream 99285 5868676 ~ 5868913 (+) True G22142
TU26403 lncRNA upstream 101823 5866033 ~ 5866375 (+) True G22139
TU26402 lncRNA upstream 102801 5865163 ~ 5865397 (+) True G22138
TU26612 lncRNA downstream 1718 5977720 ~ 5977942 (+) True G22328
TU26647 lncRNA downstream 73612 6049614 ~ 6049905 (+) False abraa
TU26656 lncRNA downstream 78142 6054144 ~ 6054618 (+) True G22370
TU26713 lncRNA downstream 229716 6205718 ~ 6208690 (+) True G22427
TU26716 lncRNA downstream 240104 6216106 ~ 6218591 (+) False zc3h10
XM_034298497.1 mRNA upstream 19746 5889581 ~ 5948452 (+) True ripor3
XM_026913686.2 mRNA upstream 211510 5717537 ~ 5756688 (+) True rbl1
XM_026918775.2 mRNA upstream 267529 5680066 ~ 5700669 (+) True si:dkey-6e2.2
XM_026912152.2 mRNA upstream 415224 5549840 ~ 5552974 (+) False mych
XM_034310062.1 mRNA upstream 415224 5550065 ~ 5552974 (+) True mych
XM_034310334.1 mRNA downstream 60712 6036714 ~ 6049905 (+) True abraa
XM_026923429.2 mRNA downstream 60712 6036714 ~ 6049905 (+) False abraa
XM_026923599.2 mRNA downstream 60712 6036714 ~ 6049905 (+) False abraa
XM_034310342.1 mRNA downstream 60712 6036714 ~ 6049905 (+) False abraa
XM_034310338.1 mRNA downstream 60712 6036714 ~ 6049905 (+) False abraa
XR_003402786.2 other upstream 215094 5717530 ~ 5753104 (+) False rbl1
TU26124 other upstream 759334 5208346 ~ 5208864 (+) True G21901
TU26030 other upstream 879620 5088134 ~ 5088578 (+) True G21835
XR_004579614.1 other upstream 1208553 4754266 ~ 4759645 (+) True spega
XR_003404681.1 other upstream 1308075 4660009 ~ 4660123 (+) True LOC113545978
TU28587 other downstream 3474923 9450925 ~ 9454462 (+) False hmga1b
TU28588 other downstream 3474923 9450925 ~ 9454462 (+) True hmga1b
XR_004577034.1 other downstream 3615939 9591941 ~ 9596854 (+) False LOC113532547
TU28879 other downstream 3919243 9895245 ~ 9907171 (+) False LOC113530691
TU29055 other downstream 4221964 10197966 ~ 10198455 (+) True G24500

Expression Profile