RNA id: XM_034310334.1


Basic Information

Item Value
RNA id XM_034310334.1
length 4587
RNA type mRNA
GC content 0.41
exon number 6
gene id abraa
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 6036714 ~ 6049905 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTAgcagataaaataaaagctgagcTCACTGTCAGATAGACACCCTCATCTCTGGAGAGTTTGTTTGAGCTCACCCTCAAGCTGGATGATTGGATGTGAGAGCGACATAGGGAACGCCGGGTTCCTCAGGCCAGGTGCCTTTCTGAAGCACCACTTTCACTTGAGCCTTCCAGCCCCTCAGCTAGAAGGTTCACTGAACCCTTGGAACAGATCACGCAACTGGGAAGTATCCACCTTTCCCTATTTGAGCGGGATGCTTGTATGAGGGAGAGCCATTTTCTTTAACGTGGGCATCCAGGTcatttttctgcttcatttcCAGAGCTCATGGGAAACATACAGCCCTCCCGAGTTCCTTTCCACTGGGATTTACCTCAATGCTGCCACATCTTGGAGAGACTACCTAGAGAGGTTGGTCACCATGTTTCTGGACTCAGGTGTCTGAGTATTCCTGTGGACCAGTgaactgtgtatgtatatagcACACATAAGAAATTTCCAAAATCATACTGGCCATCTGTTGTTCCATTGGCCCCAAGAGGGAAATAGTCTACTGATTTGTTTGGGGTCACCATGTGCGTTAAAGGAATGTCGCACCTCCCACCGCAGGACTGGAAGAAAGATCAAGGTAGCCAGCACAATGACCAACCTGGCAAAGAGTTTGCAAAGCTGCAAAGTTTCCAAAGAGTACATAGGAAAACAAGACACCATCCCTTCAGGCTGGCTGCCTGACTCTATTattgaagaagagaaagagaaggaaacagAGAGGAGCAAGCTACTGGTCACGCCGGATGTTTTCACAGTCAATAATCAAGTGAATGGGGACTATAAGAATAAGACGGgcattctgaaaaaaaacataacaccaaAACACAGTGAGGGAAACCATGATCTGGCGAGCTCCATCAAGGAAAAAATCCATGCCCATCAGACTGCCCCAGGGGAGCCAAGAAACTTCATGGGCAATGATTCTCTCAACAGGAAACACCACCATGGTGAGAAGACACTTGgacagaaagaagaacaaaaaatggGGTTATGTAGCAGTAGCTTAGATACAGAGGATAGTGGACTGGGTGAAGATGCAGACAACAGCGATCAAACTGAAGTCGAAAAGATCAAACCTATTAACAGACCCAAGATTAAGGTGTCCACAATCGGGGACCTGAGGAACCAATGGCAGAAATTTGCTGAGGAGCATGTGGAGGGTCAGAAACTCAACCCTTTTAGCGAGGACTTTGATTACAATCATGCCATGGCTGTGAGACTCCTTAAGGGAGAATTGGGATATGGACACCCTAAAGAGGGCTCCAAAACAGCCCAGCGAGCTGAACGTGCCAAGAAACATATCCACCGGGAAATGGACGAGATGTGCTTCATAATCCACGATATGGGACAGATGGACAAGGAAGGCCATATTTATGTCACTTTTGGTCGGCTCTTCGACCACTATGTCAAGATCTCTGATAAGGTAGTGGGGATTTTGCTTCGTTGCCGCAAACACAAGATGGTGGACTTTGAGGGTGAGATGTTATGGCAGGGACAGGATGATGATGTTCAAATCAGGCTGCTGGTGTGAAATGTGAATCTGGAATGCTGAAAAAAgccagTATTTAAAGAAGTACCCAAATGGTACCTTGGAACAAATATTCTCCTTCTTTGCAGCTGGACCTGGATCATATGCCTCCATGACCTCAGTGAGCCCTCATCACTGTCTCGATTAGGCTGATCAGATTCTCCTGCTTTTAGGAAGAAACTTTTAAGAGTCAACTGTTTCCCCATTGTTTGTTCAACCACATGATTGTATAGTGAACATTTACTGCTAGCACTCTGTATCAGACACCGTGAGTTTGGCAAGAGGAAATTTGAATTTTGGAATTGAATAGACTGTATATGACTGTGTGACAGgaatttttaattctgtaattgaATAACATATCTGGATTTTCTGTGCATGTCAAGAGACAGATCTGCCTATAAGAGCACCCAGAGAGTCCGTCCCTAAAACAAACCCCCATGACCAAAGACAATAGTATTATTTACCTAAGATGTGCACTTTGCTAGCTGTCTAATTTTCTCAGATAAAATGGATATTAAAGCGAATTGGGAACCATTTAGCAAACTACATGAATCCCATTTTAATTCCTGTCTCATTTTTTGAACATGACCACTATAGGTGTGATTTGCTAGAAAACAGCGATTCCACTGCAATGGCTATATGAATTAGAGGCTAGCAGCAGGTATTGATACCTGTGGAAGCCACTAGTGGCAGTGCACTTAAACTGctacattttatcatttaaatttttttttttcagcttatcATCTATATTTGTTTAAAGAGACATGCATTATTGAATAAGATGAGGTGTAAAATGAGGtctttacttattttttaaaaaatacatatgtaCTTTGTTTACATTGAAATTTGTATGttctttaaatgaatatttttactGGACACTGATTCTGGcaggaatttaatttaaacttaaaacttAATTCAGGAATTTaggaatttaaatttaaaacttaaTTTGTCAGTCAAGCAGAGTTTTTACTTGAACCCTGTTACCCATTTTAGGGTAACAGTATGGCAAATTAGAAATGGTTGATATCCTCTAATTTtctgaatgaagaaatgaagaagtTTCTGTCAGAAAATGTTGTTTTGCTACCTGCGACCCTTTCTGGGTTGTGCGTCCTGTGCATTGCATGAGAATTTGGCCTTTGTTGCACAGAAACTGTAGCAACTGAAAGTCATTCACACAATTAATCTGGAAGTCCTTGATGAAATGGTTACTTGTGACTTCTCAAATCAGTGATGTATGTATAGGGAGTGCAACAAATGCAAGAACTGCTCATACCCACTGTTCAGTCCAACATATTTTCAATATCAAACAGCAGTTTATGTACTGCAGATCCCTGAAACAGAGCCTATCCCTTAATAAATGCTTGATTCAAGTGGATTTCTCTGAGAATTATGGCTGCAAATACAGTTCAGAGATTCAAGCAGTTTATTTTGGGTCCTCATACAAGCAGGCCACACTAAGTACAGGTGTTCTGTACTTAGGTGGAACAACCAGTCCCATCTGTTTCAGCACTGTGTCACCATCTAAACAGAAAGGTCCTTCATAATATAGCAGCACTTCGAGCCAGTGCTCGAATATTTCTTTGGAATTTCAGCCATGGCAAAGGTGCCCCTGATGGGGTGGAAGGATCAATGAATAGGACAGCTGACAGGCTGATTCATGTAGCCAGGGTACTGATATCCCAGATGCTGCCGCACTGTTTAAAATCCTGACAGGCACTGACACAACTGTAAAGTTCTTCTATGTGGATGAAGAATTGATTGAGAGGGCAGTCAAAGCAATGCCTTTAGACATCCCTGCTTTACCATCCACCATGAGGTCACACCAGTTGGTCACCCTTGCCCCTGCCCACATCAAATATCGGGATGTCAGCTGCCTGTGCTCTACACAGGGCAATCTGGATTGTGAGTGTTTCAACAGCATTTCTCTTTTGACATCGAAAAATGAATTCTGTACTGCTGCACTGCCTGAGAACATTTGGCAAATTGGGGATGTAATGGGAAGGTGGTGCACCTCTATGATGGCACTGTGTACCCAAGAGTAATACTAGCAACTGACAAAACTCATTGTAGACAGAAATGCATGCACCGGGTGGGCACCAACAGATTCTTTTGGCTTCTCAGAGATTATATTTACCTCTTGTCATGTGGAGATTACAGAAGAGATGTGGTCAAAATTTACAGCATGTGAAAAGTGAATACTTTTTGAACACagaatatatatttgaataaatctGAGTACATTTCATCAGAATGCAGTGTCTTTTCCTTAACTTGATGttctgttttacattttaaactgcTCTGTGTTCTTTTTGCAGTCTTGTGAAGTGGGAATGTAATCTTTTCATTCAAACCTGTACTCACTGCAACCCTTTTACACGAGTTTTAACcttaattattttatgaaaatggattaaaagaatgcttttaatgaaaatattttgatattttttattgccctattttttatattttctgtgtttttttactgaattattATCAACTCAATGGGAAATATGGTAAACCCTGTAACTCGCTTTAACTCTGTTACCCAGCTTTCAACCctgttattcagttatttttgaaaatagtCTTAAACCATTTAAGAAGTTATGTTAAAAAATCTCTAATGGCTTTGAAGTAATAGTAAATGgcttacaaacatggctgccgcAATCTCCAAGACCTCACCCATTCACCTGAATACTAATGCACACCTGTTCTCAATCACACCCTCACCCTATATATACACTAACTCTAACAAGGAGTCTGTGCAAAGTAGTGCTCAGTGTATGACTGGTTTACCAAGCCTTTTGTTTGCATATTTTCTATTCTGGTTTTCTGATCTCACCTTGCTTCCAGGTTTTTGTATTTTGCCCTTGAATtgttgtttgctgattgcctgacATCTTGCCTGTTCCTGTTTATGAGTTTGCTTCACATTTTTGCATCTGTTTgccagttttaataaaaattctaaaCTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26612 lncRNA upstream 58772 5977720 ~ 5977942 (+) True G22328
TU26611 lncRNA upstream 61794 5974599 ~ 5974920 (+) False tmem74b
TU26524 lncRNA upstream 72319 5897611 ~ 5964395 (+) False G22244
TU26523 lncRNA upstream 72319 5956821 ~ 5964395 (+) True G22244
TU26406 lncRNA upstream 167801 5868676 ~ 5868913 (+) True G22142
TU26656 lncRNA downstream 4239 6054144 ~ 6054618 (+) True G22370
TU26713 lncRNA downstream 155813 6205718 ~ 6208690 (+) True G22427
TU26716 lncRNA downstream 166201 6216106 ~ 6218591 (+) False zc3h10
XR_003403368.2 lncRNA downstream 263577 6313482 ~ 6316704 (+) True LOC113532782
TU26773 lncRNA downstream 263858 6313763 ~ 6316463 (+) False LOC113532782
XM_026937631.2 mRNA upstream 60712 5968198 ~ 5976002 (+) True tmem74b
XM_034298497.1 mRNA upstream 88262 5889581 ~ 5948452 (+) True ripor3
XM_026913686.2 mRNA upstream 280026 5717537 ~ 5756688 (+) True rbl1
XM_026918775.2 mRNA upstream 336045 5680066 ~ 5700669 (+) True si:dkey-6e2.2
XM_026912152.2 mRNA upstream 483740 5549840 ~ 5552974 (+) False mych
XM_026921399.2 mRNA downstream 109432 6159337 ~ 6180525 (+) False ywhaba
XM_026921391.2 mRNA downstream 109443 6159348 ~ 6180525 (+) True ywhaba
XM_026924826.2 mRNA downstream 166042 6215947 ~ 6227161 (+) True zc3h10
XM_034298585.1 mRNA downstream 168181 6218086 ~ 6227161 (+) False zc3h10
XM_026915872.2 mRNA downstream 197871 6247776 ~ 6305169 (+) True esyt1b
XR_003402786.2 other upstream 283610 5717530 ~ 5753104 (+) False rbl1
TU26124 other upstream 827850 5208346 ~ 5208864 (+) True G21901
TU26030 other upstream 948136 5088134 ~ 5088578 (+) True G21835
XR_004579614.1 other upstream 1277069 4754266 ~ 4759645 (+) True spega
XR_003404681.1 other upstream 1376591 4660009 ~ 4660123 (+) True LOC113545978
TU28587 other downstream 3401020 9450925 ~ 9454462 (+) False hmga1b
TU28588 other downstream 3401020 9450925 ~ 9454462 (+) True hmga1b
XR_004577034.1 other downstream 3542036 9591941 ~ 9596854 (+) False LOC113532547
TU28879 other downstream 3845340 9895245 ~ 9907171 (+) False LOC113530691
TU29055 other downstream 4148061 10197966 ~ 10198455 (+) True G24500

Expression Profile