RNA id: TU28588


Basic Information

Item Value
RNA id TU28588
length 1989
RNA type TUCP
GC content 0.40
exon number 5
gene id hmga1b
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 9450925 ~ 9454462 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agccccgccccctttatATTCTTTCAGCCTGAGACTCCTGCTGGCGCGCGAttggcttattattattatagcgcTTATTCGCAATACGCGCTTCTCAAATCGCTCCACTTCAGAAACACACAGCTGATTTCCTTCATCTACGCATGCGGTAAGTTCTTGCATGGCTTTAGCCAAGTTTTGGTGGTAGCTCCATCGAATAGCCATTGTCCTTTAATTCAATCGGGAGACATTGTGCGCTGGAGGTGGGGCTACTCGCagatatacaatacacacagctttatatttttatttggttCGCCTAGAAACCCGAAGGCTCGAGCGCTGCATGTGACGCTGGAAAATGAGTGACTCCGAGAAGCAGACAATTTCTGTGAAGGAAAAGGACGGAGTGGAGAAGAGAGGACGAGGAAGACCGAGAAAACATCCAAAGGAGTCCAGTGGATCTCCGGTTCCGAAAAGACCGAGAGGGCGGCCAAAGGGCAGCAAAAATAAAGGACCTTCCAAGAAAAAAGCGGGATCATCTTCAGAAAAGAAGCTAAAGGGGAAGCCCAAGAAGGAGGAAAAGGAGGCATCTCAGGAGTCctctgaggaagaagaggaggatgaagatgaggaacAGTAACTACCTCATCCTCGGCACTACCTCATAATATGACACAGCCTGGCACCACTTACTAATCTACAGCCTCTAACAACGGGATGTCGTCCGCTCAACCACCTCTGTGGGACTGACATAAATATCATGTCTATAACAATCAGTTACAtgtataaacaaaaaagaaaaaaaaaagtggaataaTTTTAGAATCTGTGAATTAGGCTGCATATAAGTGTTTAGTCCATTAATGGTGCTTACTTGGtgcttttctatttttgttttggtttgcttTTTATGTACTTTTTGTGACGTGGAAGGTCAGGGGGGATATAGAATTAGAAGAAGAAAACTGTTCTGACCGTGATGTGTAGTGGTCCTATAGTTTTAGTGTAGGGCTTTCTGCTTAACTGcagctgaattattattatttttttttttttaaaaaacacccCCTGCACTGACTAGATTTTATCTTATTAGATTGCCTTTATTATATATGTTGATGCGTGAATATTCACCATTTGTTGAAGGCtaggtgtgtgtattttgcaaGATAAACAGATCATGCGTTTAGATTTGAATACACCATTTTCAGTCTTTCTCACTCTGGTGTAATAGTTGAGTAGGTGATATACGTAGATGTGTCTGATTCTCATTGCAAGTACATTCCAGTAGCATTTTTAACACACTTCTGACTAATTTATGTGGACTGTTcctcatacatatatatatttttttttcttttcatcgaCAGTTTTGCCTCTTTTACTTAACTTTTACCAACAGGTCACTTTTCTAGGTCAGAGAAAAGTACACACAGGCAGATAAGTCTTTAGCTCTGgtcagcattaaaaaaaaaaaatactttacagtTGTAAATTTAAGGATCCACCCAAATCCTTCTGGGAGTTTACAGAGTACACCTGTGAAATAATGCACACTTGAGCAGCTATACCTCAGTACCATGGCTTGTGCTTGTGACAGGTTTGCATATATTGTCAGATCAGCTTACATGAGACTGTGTCATTTGGATAACTTTAGAATAGTCagaatgactgtttttactCTGCATCACACATCCCATCTGTCCACATTCTCTGAACCATAGCAACAATATGCATCAGCCACCTCAGGAATTACAGTACATAGACAGCAGGCGACAAGCCAAGTAGTGTTCAGATAGCACTGATAACTTCTGTATAGAATGTGTTCATCATTTCTGTGGAAAACAACCTTTGCTCTGTACCTATTTTTAATGCAGCTGAGGAATTGTCTACAAGCTCTTTTAGGCTTATACCACGTTTGTTGATGCCGCAAATACCTATTTATTTCACGTTTAATTGAGAATTCAGTTGTATCTGTGTAGCATGTTGTGTTGTTAATAAAGTATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28580 lncRNA upstream 16714 9433975 ~ 9434211 (+) True G24118
TU28567 lncRNA upstream 22708 9426857 ~ 9428217 (+) True G24108
XR_004577370.1 lncRNA upstream 92927 9337143 ~ 9357998 (+) True LOC117596200
TU28378 lncRNA upstream 131875 9318314 ~ 9319050 (+) True G23934
TU28377 lncRNA upstream 132034 9318314 ~ 9318891 (+) False G23934
TU28574 lncRNA downstream 14082 9468544 ~ 9471574 (+) False G24114
TU28575 lncRNA downstream 14082 9468544 ~ 9471574 (+) False G24114
TU28576 lncRNA downstream 14082 9468544 ~ 9471574 (+) True G24114
TU28605 lncRNA downstream 64204 9518666 ~ 9518987 (+) True G24137
TU28635 lncRNA downstream 133835 9588297 ~ 9588508 (+) True G24159
XM_026925509.2 mRNA upstream 355183 9088734 ~ 9095742 (+) True abhd14b
XM_026926274.2 mRNA upstream 387427 9050896 ~ 9063498 (+) True si:ch211-161c3.5
XM_026928057.2 mRNA upstream 400426 9047050 ~ 9050499 (+) True LOC113535004
XM_026924543.2 mRNA upstream 445984 8997005 ~ 9004941 (+) True cysltr3
XM_026915122.2 mRNA upstream 602980 8798743 ~ 8847945 (+) True uba7
XM_026918709.2 mRNA downstream 214 9454676 ~ 9467790 (+) True nudt3b
XM_026920505.2 mRNA downstream 19077 9473539 ~ 9498758 (+) False pacsin1b
XM_026920543.2 mRNA downstream 28977 9483439 ~ 9498758 (+) False pacsin1b
XM_026920515.2 mRNA downstream 29369 9483831 ~ 9498758 (+) False pacsin1b
XM_026920534.2 mRNA downstream 34262 9488724 ~ 9498758 (+) False pacsin1b
XR_003402786.2 other upstream 3697821 5717530 ~ 5753104 (+) False rbl1
TU26124 other upstream 4242061 5208346 ~ 5208864 (+) True G21901
TU26030 other upstream 4362347 5088134 ~ 5088578 (+) True G21835
XR_004579614.1 other upstream 4691280 4754266 ~ 4759645 (+) True spega
XR_003404681.1 other upstream 4790802 4660009 ~ 4660123 (+) True LOC113545978
XR_004577034.1 other downstream 137479 9591941 ~ 9596854 (+) False LOC113532547
TU28879 other downstream 440783 9895245 ~ 9907171 (+) False LOC113530691
TU29055 other downstream 743504 10197966 ~ 10198455 (+) True G24500
XR_003403740.2 other downstream 1300053 10754515 ~ 10754622 (+) True LOC113537259
TU29627 other downstream 1451738 10906200 ~ 10908572 (+) True G25029

Expression Profile