RNA id: XM_034314723.1


Basic Information

Item Value
RNA id XM_034314723.1
length 5343
RNA type mRNA
GC content 0.40
exon number 9
gene id LOC113530691
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 9874708 ~ 9923165 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACGCCGGAGGCTGCGATGCTGAGAGACGATTGCGGTGTGTGagaatgaaaatgtgtgtatctGCGCATCCGCCGGTCCCAGCACAGAACGCCGTGAGGCCACTGCTttccggagtgtgtgtgtgaacgtgtgtgtgtgtggggggaccttaagagaagaaaaaaaaccaacaacaacacttTAAAAAGCTATAATTTGGTTATTTTTATGAGGAGGATAAGCCAAAGTGCTGTGAAATTTCAGCTTTCGTTTCTGCAGAGCGACTCAGAGTGTCCTGCCGCATTTGGCGAagttttctctccctctctccctccctccctcctccttctCCGGCTACAGCTCCTGTCGCAGTACACCTCAGCCCAAGGAACACTGAGTGCCTAGCTGGAGATCATGAAGTGGAACCTCTTCAAGAAGAAACCAGAAGCCATGGTGGGTCCTGAGCCCACGGGTTTGGGGGGAACGCACCCACCCAGCACCATGACAATGGCCCCTGCTCTCTCCACTGCAGCAGACAACTCCACAGAGTCTGGGGGCTCTTCCATGGATGACATCTTTGAGAAGATCAGGAACAAATTCCTTAATGAGATCGAGACAATCCCATTGCCTCCCTGGGCACTGATCGCGATCGCCGTAGTAGCGGCTCTTCTCATCGTCACCTGCTGCTTTTGCATCATTAAGAAATGCTGCtgcaagaaaaagaagaacaagaaaggaaagaagggcAAGGATGGCTTCAACATGAAGAATATGCAGGGTGGAGATAAACAACAGGACGACGACGATGAGGATGGAGAAACAGGTTTAACcgaggaagagaaagaagaagaggaaaaggagcAGGAGAAACTGGGCAAGCTGCAGTATTCTTTGGATTACGACTTCCAGGACAACAAGCTGACAGTGGGGATCTTGCAGTGTGCTGACCTGATTTCCATGGACTCTGGAGGAACTTCAGACCCTTACGTTAAAGTCTTTCTCCTCcctgacaaaaagaaaaagtttgaCACCAAGGTGCACAAAAAGACACTGAATCCTGTATTCAACGAGACTTTTGTTTTCAAGGTCCCGTACCAGGAGCTGGGAGGAAAGACTCTGGTTATGTCTGTTTATGACTACGATCGCTTCTCCAAGCATGACATCATTGGTGAAGTCAAACTGCCCATGAACACAGTGGACTTGGGACAGCCCATTGAGGAATGGAGGGACCTGGAAAGTGCTGAGAAGGAAGAGCCAGAGAAGCTTGGTGATATCTGCATTTCACTGCGGTACGTCCCCACTGCCGGTAAACTGACTGTCTGCATTCTGGAGGCCAAAAACCTGAAGAAAATGGACGTGGGTGGACTATCTGATCCATATGTGAAGATCCAACTGCTACAGAATGGCAAGCGtctaaagaagaagaagaccaCAGTGAAGAAGAATACACTGAACCCTTACTACAATGAGTCATTCAGCTTTGAGATCCCACTGGAGCAGATGCAGAAAATCCTTGTGGTGGTCACCGTCTTTGACTACGACAAGATTGGTAAGAATGATGCCATCGGAAAGATCTTTATTGGCAGCAAGGCCACGGGCACAGAGCTGAAGCACTGGTCCGACATGCTGGCCAACCCACGCCGCCCTATCGCTCAGTGGCACACCctgaaagaggaagaggacaTAGACGCCACGCTGGCTGCTCTCCATGCCAAGAAGTAATTTCACCTCTCTACAAATTCAACTAATCAACTAACCTTCCTCCTCAACCTATCCAACCCAGCCACCATTGCATGAAAGCCGACCAACCACTGCCCATGCCTACTCCAAATAATGTTCAGAATAATGTACTGGAAAAAGTCAACATTGCTGAATGTGAAAACTCCATGTCTCCCCAAAAACCAGTTCATCCTGTAGTGTACACTGAGAGGAAGCGTGGTTGAAGAAGACATGTTTTGTCGTTCCTAAGCAGTTTTCAAATTGTCATCCCATACTCCTGCAACAGAGGAATATTTGCACATGGATTCATATAGCTTTCATAACACAGACATGCCATCTTCATTTACTGTGGTCAGTTACCATCAACATACCAAAATGATTCAATGAAATAATATCATTGCGTGTATATAAGAGCAAGAAAGTGCTAAAAATCAGACTACctgataaaatatatttaaatagtatAGGAATAATATATATGAAcgattaaattatattatatatttttcacaccCTATGTATCAGCATTTATAAGTTTCAATAAATGATGGCTATCCAACATTGTCACATTTATTGACACAACTTGAAAGTTGAAAGGCTTTCAACTGGTTCTCTGCACTGAGATTTGAAGCAAAATATGCCTAATTCACAATTTACTCAATTTAGCCATACACTGGTACAAGTCACACATTGCTCATGAATAGTAAGGTAAGTCTActctaaatattttacaatgaagttgtttacaaaatgtgtgtaaatcttTAAGGCTGCTAGACATGAGTTTAGCTTTTAGAAATCTAAAAGTTAAATGTGCTTTTGAGATGAAAGAAGAATCAGGGCCACAGATTTTTCTGGAGCGATTTACAGCTCTCTGTTAACACAGTGCCCTACCTGTTGAAAAATGGTCTAAAACAAAAACGAAATTAgtaatattataatacattataccTAAACCGTTACATCTGATCTCAGTGCTACAGATGTTTATTTGCCAGAGGTTTCTGTAAGGTTTTAAAAAGAGATTATCCTGGTGATATTGCCTTATTAAATAAGGATTAAATTCATTAATCTTACCATATCATGTACACTACACTTAAACTGACCAAGAATGCTTTGTGAGAACAAATCAATTGCCATCGTTGAGTATGGCTATTAATTCACAGAAGCTTCGAATCCATTTTCCATTCTCTTGATTcgtgtatatgtataatatacattttaagcCTCTGGTTAGTTCACtgcctttgtttgtttgaagGAACTTTGCCTACAACCACAAACAAACCCATTAAACGCCATTCAATCAGAAgacatttgacatttgaaaTGCCAAAGTAATAATGCAGGTTTAATGGGAAGGGATGCAGTTCACTGGAGATGTGACAAACATTGGCTCATCTCTGTTCTTTTATGTTAGAAGGGACAAAACGAGGCAATAGGCCACGCTTAGTTCAGTCCATTAATGGGCACTTctttccctctgctctcctctaaTTGTGCTGTACATATGCATTGATAAACTTTGTTAATACAGCATGTGTCTATACCTTGATGTACATAGAAGCATGTTTTGAAGATAGAGcatatattgtgtatgtgtggcaTTTGTCATTTTGATAATAAAACGTAGAGGAAAAATACAATGactgcacattttattaaattccCCAGAGCGGGTATAGGAATTAATGTAAATCTTTAGCTGAAGATTTAAAGCCTTTCAGGttcctttattttccttttgatCGGAGGAGTTCTACTCTGAGCTGtgtgcaaattttattttattcaaatgtgcCATATTATTGTGGTTGTGTTTGagatttattggtttatttatgAGCTTATCATGCTTTCTTTATGCTCATTTTATGTCCAGTCGATATTTCTTTGTTAACTTTTCtgtatttgttctgttttgctgatatgttatgttatgtttgtgaatacaatattctgattttttttctgtttaaagaaATCTGTGTGTATTTACGGTAAGAAAAGCTAAGTCAGAAGCCATATGTGTGGTCCCTTTTCCACAAAACCTTATAATCGTAGGACAAGAACGTGTACCTCagtgacaaaaaaacaacagatcaCACACTCTTTGTACATCCCTTTGAATCAAAAGATGTGAAAGGAAatctgagttttaaaaaaagtagcTGTCTGTTGAAAGGcagtgtaatgttttatttcttttaatgaaCAGATCACAAAGAGGCAGGACTCAAATCATGCTAAAGCCAGTTCATGCACACATGTCGTTAGTCATAGAGTAATCGTATGTTAGTGGTAGCTCTCTCTACATCAGTGTAATCCAAAACAAATTGATTTGGTGTTTCACATTAATCAGCACACAAATGCTTGCAAAAGATATGATTAGTAGAACGAGTACAGTTCTAGTGATCTACATGTAACAGTGGCATGATTTTATTATGCAATGTGTGTCTATGTTAGTGTATGcctgcgtgtgagtgtgtgtgttaaaagtaTTTACATTAATCGAGGTTTGAAGTTTTGCCAGATGGCTAAAAGACATTTATGAGTGTCTTATAATTGATGAGAAGAAAACCTATCATTATAGATTATTGAAACAAAAATGTTGTTGTAAAATCCTGTTATTTAATGTGACGTGTGatcctttgttttttcctaaCATCCAATGATTTCTTTGAACGAGCCTACACATTACTTCATGTAGGAGTTACACCATTATGTGTGGGCCTTTTTACAGCTTAAAAAGAGGACAGTTTCATGTCTGTCACTGGGGGGGAAATGCTGTGACTAGCCTACTGTGAAtaagcattttcttttatttccaaCTCGTGTGTATGGAGTGAGTTCAAAGCCCCTAACAGGCCTTGTCTTTGGTATCATGCTTACATCATGAAAAGTCTAGCAATggatctatttttttttttccttccattttgAATGTCTTGCTTTCTAAAGTTCCATCAAAGGTGTGTTTTGTCTTTGGAACATTTGCTTTAAAGTGATGTGTGCTTTTTAAGTCATGTCCAGCTGCCATGGACTTCTGTGCTGCTGCTTAGGACGTTGCAATAGGaccaatgaagaaaaaaaatgtcttcatgtTTTTTGTGTGACCATGATTGAAAAGCTACAGGGGATCATTACACCCCTGCCAAGCAGACAACAAAATCCCAGTCTTCCCTGGGACACTGGATGCCAGATGACTGGCCCCTTGCCCATACTGAGACATTTAATTTCACCACCTGTCCGGCCCATATTAATGGCAAACACTTTGCCTATGCCATATTGTCGACACATACTTACTAATATGATCTAACACACTCGTTCTCTGTATTCATTTCATGGTGAAACCATGTAAAGACTTTTCCAAAGACCTGCTCGTCCTCGTCCATTGTGTCTCGTGTAGAGGTACCTGTGTCAGTGATTCCTTTTGTGGATGCTTTGGCATGCTTTTATCTCTTACAGAGGATCCCATTTACCATCAGAAGATAAGCCTTTGCTATTCCTGTAGGTTATTGTCATTCTGTAAACCAATAATGTCAGTACTTGAAGAGATACCAGCCACTAAAAAAAGGTCTACATGCAGATTCATCCATTGGTTATCAACTAGCTAATCATATGAAATAAAGCCTTTTAAATATC

Function

GO: NA

KEGG:

id description
K19902 SYT2; synaptotagmin-2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28780 lncRNA upstream 105208 9769288 ~ 9769501 (+) True G24289
TU28774 lncRNA upstream 115743 9758585 ~ 9758966 (+) True G24283
XR_003403551.2 lncRNA upstream 135258 9738017 ~ 9739451 (+) True LOC113534952
TU28665 lncRNA upstream 205318 9658633 ~ 9669391 (+) True G24183
TU28657 lncRNA upstream 259246 9613112 ~ 9615463 (+) True G24178
TU28891 lncRNA downstream 15232 9938397 ~ 9941183 (+) False manbal
TU28932 lncRNA downstream 70397 9993562 ~ 9995992 (+) True G24390
TU28915 lncRNA downstream 82372 10005537 ~ 10010435 (+) False LOC117599366
XR_004579833.1 lncRNA downstream 82915 10006080 ~ 10010607 (+) True LOC117599366
TU29018 lncRNA downstream 219844 10143009 ~ 10143237 (+) True G24463
XM_026925788.2 mRNA upstream 6434 9855971 ~ 9868275 (+) True mybphb
XM_026925796.2 mRNA upstream 6434 9855971 ~ 9868275 (+) False mybphb
XM_026925802.2 mRNA upstream 6434 9855972 ~ 9868275 (+) False mybphb
XM_026921885.2 mRNA upstream 19168 9788663 ~ 9855541 (+) True nav1b
XM_026913704.2 mRNA upstream 162871 9694499 ~ 9711838 (+) True pkp1b
XM_026920222.2 mRNA downstream 15200 9938365 ~ 9941187 (+) True manbal
XM_026920240.2 mRNA downstream 15231 9938396 ~ 9941187 (+) False manbal
XM_026920232.2 mRNA downstream 15386 9938551 ~ 9941187 (+) False manbal
XM_034310659.1 mRNA downstream 15480 9938645 ~ 9941187 (+) False manbal
XM_026930662.2 mRNA downstream 40808 9963973 ~ 9974363 (+) False LOC113536587
XR_004577034.1 other upstream 277855 9591941 ~ 9596854 (+) False LOC113532547
TU28587 other upstream 420247 9450925 ~ 9454462 (+) False hmga1b
TU28588 other upstream 420247 9450925 ~ 9454462 (+) True hmga1b
XR_003402786.2 other upstream 4121605 5717530 ~ 5753104 (+) False rbl1
TU26124 other upstream 4665845 5208346 ~ 5208864 (+) True G21901
TU29055 other downstream 274801 10197966 ~ 10198455 (+) True G24500
XR_003403740.2 other downstream 831350 10754515 ~ 10754622 (+) True LOC113537259
TU29627 other downstream 983035 10906200 ~ 10908572 (+) True G25029
TU30526 other downstream 2281364 12204529 ~ 12207257 (+) False si:dkeyp-67f1.2
TU30617 other downstream 2603005 12526170 ~ 12527491 (+) True G25908

Expression Profile