RNA id: TU29627


Basic Information

Item Value
RNA id TU29627
length 1700
RNA type TUCP
GC content 0.46
exon number 3
gene id G25029
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 10906200 ~ 10908572 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttttaaaacaagacGCCAAAtagacactttattttaaaataaagaaaaatacaaaaaacaaaaccatttgAAACTATACAAGAGCCCAGAGCTGTGAACAGAAAAGGTTCATAACACATTCTCTTCCAGTGTGGCGAATCAAGGTCTTGGGGGACGCATGCCTGGAGGAGGAGGCCCTCTCATTCCTGGTGGTGGAGGTCTCATGCCTGGAGGAGGCATGCCCATGGGGGCACCGCGGCCTGGTGGCATGCCCATTGGGGGGCCCATCGGTGGCCTCATGCCTGGGGGAGGACCCATCATGCCTGGAGGTGGTGCACCTCTGCCCATGGGAGGAGGAGGGCCACCTCGGCCTGGTGGATATTGTGTGGGTGCACCGGCGATGCTAGCACCAGCCGCTGCTGCAGCCACTGTGCCTCTACCCTGAGGGGTCATCACCTGGAAGGAGGTGCAAGCGAACAGCCGTGAGCATCACCAGGAGCTAAAACCTCATATAATGGCAACCAAAGCCAATCTGGTTGACCTTAAGTCAACATAAGTCAATAGTCAATCATTCTAGTAACTGTTAGCTGAAACTATGTCTTAAAGTCAGTACCCAAAACAGACTGTTCCCTCAAAACACGCCTCGAACACACATGTGCTGCCTAAGCTAGAAGAGGAAGCTGATATTCAGGTGTGGTGTAGAAACTAAAGCACCTATTATAATCACAGAAAGCAAAGGACTAGTAACTCACCTGTTGTGATGGGCCCCCGACTCCTCTCACTGGTCCAGCAAGTCCAGCAGGAGCCTGTGCCATGGGAGCTCCAGCTGGTACACCTCTGCCTGCTGCTCTGCCCACACCTGGGCCTCCTGCCACCCCAGCCAGGGGCACTCTGGCAATGCCAGTCTATAACAGAAGCCAGAGTTTAGACTTGCAAATGTGAATGCATACGATTACAAAACCAAGCATGGTGAGATGGTTGTCTAACTTACATCTTTGGGAGGTGGTCCTTCAACAGTCATGGAGACCAGATTCTCTCCTCTGAGTAACACCAAACCCAACACTCgcttctcctccctctctggcTGCTTGGAATTTTTAGGCCTGCGAAACATAATAGGGAGCAGCTACATTTAAAGCATTCAGCAGACATGTCATGTCACAATATGAAATTTTCACAGTATGATAACCTActataaaaatatcacatcttGATCTAAACAAACAAGCTGGTGGTGGAAACtacacaaaaaatgtattttcaggATCTTTGTGCAAAAGCCTCTTTAATACAGCTTTGtataacaaaaaaagttttttttttttttttagaatgacTTTCACAAAATCTCTTACTGTGTAAATACTGTGAAAGTCATAAGCTGAAAGAGCATTGCAACGAAAGGTGTTACAGAaggctttcaaaaaaaaaagggggcaaTTGTTGCATTTAGTTCTGGTCAGCAATGCCAAGGTGATGACTGTCTTGTATAGTAAAGTATCAACATGATCAGAGAGGTAGCAATGCACCTCTTTAGAACAGCGGCAGATTACACAGCCAAAGAGTTTACAGTGCAGACCCATCCCCTGTGTGCAGAATCATTGGTGGCTATATGATGATTTGGGTGAATGGAGgggactgaaagaaaaaaaaaatctatcctGTATTTCTGGGGGTGTTGCAGCCGGGCATAAAAGGAAtgagaaccactggagtaaGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29576 lncRNA upstream 59075 10821467 ~ 10847125 (+) True G24989
TU29341 lncRNA upstream 415912 10489288 ~ 10490288 (+) True G24759
TU29333 lncRNA upstream 453438 10452249 ~ 10452762 (+) True G24751
XR_003403528.2 lncRNA upstream 510656 10381401 ~ 10395544 (+) True LOC113534804
TU29248 lncRNA upstream 585404 10320531 ~ 10320796 (+) True G24670
TU29633 lncRNA downstream 7484 10916056 ~ 10918504 (+) True G25035
TU29719 lncRNA downstream 325550 11234122 ~ 11234603 (+) True G25110
XR_004579381.1 lncRNA downstream 416838 11325410 ~ 11327031 (+) True LOC117598838
XR_004579383.1 lncRNA downstream 417320 11325892 ~ 11327031 (+) False LOC117598838
XR_004579382.1 lncRNA downstream 417320 11325892 ~ 11327031 (+) False LOC117598838
XM_026930188.2 mRNA upstream 538183 10354311 ~ 10368017 (+) False tfap2c
XM_034300033.1 mRNA upstream 538183 10354327 ~ 10368017 (+) False tfap2c
XM_026930172.2 mRNA upstream 538183 10356414 ~ 10368017 (+) True tfap2c
XM_026930180.2 mRNA upstream 538183 10356414 ~ 10368017 (+) False tfap2c
XM_026916832.2 mRNA upstream 590675 10289199 ~ 10315525 (+) True rtf2
XM_026927245.2 mRNA downstream 26132 10934704 ~ 10974521 (+) True necab3
XM_034299987.1 mRNA downstream 29963 10938535 ~ 10974521 (+) False necab3
XM_026923214.2 mRNA downstream 119736 11028308 ~ 11058982 (+) True snta1
XM_034312255.1 mRNA downstream 304773 11213345 ~ 11252653 (+) True ralgapb
XM_034312256.1 mRNA downstream 304773 11213345 ~ 11252653 (+) False ralgapb
XR_003403740.2 other upstream 151578 10754515 ~ 10754622 (+) True LOC113537259
TU29055 other upstream 707745 10197966 ~ 10198455 (+) True G24500
TU28879 other upstream 999029 9895245 ~ 9907171 (+) False LOC113530691
XR_004577034.1 other upstream 1309346 9591941 ~ 9596854 (+) False LOC113532547
TU28587 other upstream 1451738 9450925 ~ 9454462 (+) False hmga1b
TU30526 other downstream 1295957 12204529 ~ 12207257 (+) False si:dkeyp-67f1.2
TU30617 other downstream 1617598 12526170 ~ 12527491 (+) True G25908
TU31442 other downstream 2357455 13266027 ~ 13331868 (+) False si:dkey-238f9.1
XR_004577014.1 other downstream 2587284 13495856 ~ 13499365 (+) False tshba
XR_004577009.1 other downstream 2587285 13495857 ~ 13499365 (+) False tshba

Expression Profile