RNA id: TU29719


Basic Information

Item Value
RNA id TU29719
length 336
lncRNA type intronic
GC content 0.37
exon number 2
gene id G25110
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 11234122 ~ 11234603 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGACGGCATTGCTCCCAGAGCAACGTTTGTgcgctcatgtatgtggaagaggcaGATAacgctttcctcagagtgtgttactctgccctgcagcatgagcagcagtttgaaaagctggCTTCTATAGTGTTTCATCAAGTTAAAAGTCACTACCATGAATCACTACCATGATTAATTGatgtttttagatgttttatgGGTTACAATTTCACATTATTGCTAAATGAATTGTTTCACAATTTTTTGGTCAAGCACTTTTGGATATTATTgtttttagtagtagtagcagaagTAGTAATTTATTGATCCCTTAAGGACTACATAGTAAATTTAAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29633 lncRNA upstream 315618 10916056 ~ 10918504 (+) True G25035
TU29576 lncRNA upstream 386997 10821467 ~ 10847125 (+) True G24989
TU29341 lncRNA upstream 743834 10489288 ~ 10490288 (+) True G24759
TU29333 lncRNA upstream 781360 10452249 ~ 10452762 (+) True G24751
XR_003403528.2 lncRNA upstream 838578 10381401 ~ 10395544 (+) True LOC113534804
XR_004579381.1 lncRNA downstream 90807 11325410 ~ 11327031 (+) True LOC117598838
XR_004579383.1 lncRNA downstream 91289 11325892 ~ 11327031 (+) False LOC117598838
XR_004579382.1 lncRNA downstream 91289 11325892 ~ 11327031 (+) False LOC117598838
TU29983 lncRNA downstream 192796 11427399 ~ 11427789 (+) True G25344
TU29995 lncRNA downstream 207884 11442487 ~ 11444101 (+) True G25355
XM_026923214.2 mRNA upstream 175140 11028308 ~ 11058982 (+) True snta1
XM_026927245.2 mRNA upstream 259601 10934704 ~ 10974521 (+) True necab3
XM_034299987.1 mRNA upstream 259601 10938535 ~ 10974521 (+) False necab3
XM_026930188.2 mRNA upstream 866105 10354311 ~ 10368017 (+) False tfap2c
XM_034300033.1 mRNA upstream 866105 10354327 ~ 10368017 (+) False tfap2c
XM_034299955.1 mRNA downstream 28527 11263130 ~ 11305695 (+) False LOC113533429
XM_034299935.1 mRNA downstream 28528 11263131 ~ 11312925 (+) True LOC113533429
XM_034299937.1 mRNA downstream 28528 11263131 ~ 11312925 (+) False LOC113533429
XM_034299941.1 mRNA downstream 28528 11263131 ~ 11312925 (+) False LOC113533429
XM_026925588.2 mRNA downstream 28530 11263133 ~ 11312925 (+) False LOC113533429
TU29627 other upstream 325550 10906200 ~ 10908572 (+) True G25029
XR_003403740.2 other upstream 479500 10754515 ~ 10754622 (+) True LOC113537259
TU29055 other upstream 1035667 10197966 ~ 10198455 (+) True G24500
TU28879 other upstream 1326951 9895245 ~ 9907171 (+) False LOC113530691
XR_004577034.1 other upstream 1637268 9591941 ~ 9596854 (+) False LOC113532547
TU30526 other downstream 969926 12204529 ~ 12207257 (+) False si:dkeyp-67f1.2
TU30617 other downstream 1291567 12526170 ~ 12527491 (+) True G25908
TU31442 other downstream 2031424 13266027 ~ 13331868 (+) False si:dkey-238f9.1
XR_004577014.1 other downstream 2261253 13495856 ~ 13499365 (+) False tshba
XR_004577009.1 other downstream 2261254 13495857 ~ 13499365 (+) False tshba

Expression Profile