Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU30050 |
| length | 293 |
| lncRNA type | inter_gene |
| GC content | 0.37 |
| exon number | 1 |
| gene id | G25408 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047596.1 |
| NCBI id | CM018542.1 |
| chromosome length | 35203048 |
| location | 11579738 ~ 11580030 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | description |
|---|---|
| ko04060 | Cytokine-cytokine receptor interaction |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU30029 | lncRNA | upstream | 94372 | 11484801 ~ 11485366 (+) | True | G25387 |
| TU30016 | lncRNA | upstream | 118393 | 11461122 ~ 11461345 (+) | True | G25374 |
| TU30014 | lncRNA | upstream | 119267 | 11460261 ~ 11460471 (+) | True | G25372 |
| TU30013 | lncRNA | upstream | 121734 | 11457778 ~ 11458004 (+) | True | G25371 |
| TU29997 | lncRNA | upstream | 134302 | 11445124 ~ 11445436 (+) | True | G25357 |
| TU30052 | lncRNA | downstream | 5377 | 11585407 ~ 11585643 (+) | True | G25410 |
| TU30064 | lncRNA | downstream | 39139 | 11619169 ~ 11623069 (+) | True | G25422 |
| TU30080 | lncRNA | downstream | 82200 | 11662230 ~ 11663094 (+) | True | G25434 |
| XR_004579590.1 | lncRNA | downstream | 88789 | 11668819 ~ 11688224 (+) | True | LOC117599151 |
| TU30103 | lncRNA | downstream | 152394 | 11732424 ~ 11792125 (+) | True | G25452 |
| XM_026922402.2 | mRNA | upstream | 607 | 11536329 ~ 11579131 (+) | False | arhgap9 |
| XM_026922392.2 | mRNA | upstream | 607 | 11538020 ~ 11579131 (+) | True | arhgap9 |
| XM_026925428.2 | mRNA | upstream | 58828 | 11517494 ~ 11520910 (+) | True | ddit3 |
| XM_026919898.2 | mRNA | upstream | 79222 | 11486737 ~ 11500516 (+) | True | dctn2 |
| XM_026919906.2 | mRNA | upstream | 79222 | 11486737 ~ 11500516 (+) | False | dctn2 |
| XM_034312199.1 | mRNA | downstream | 115601 | 11695631 ~ 11753218 (+) | True | LOC113526407 |
| XM_034312206.1 | mRNA | downstream | 115601 | 11695631 ~ 11753218 (+) | False | LOC113526407 |
| XM_034312208.1 | mRNA | downstream | 115601 | 11695631 ~ 11753218 (+) | False | LOC113526407 |
| XM_026913468.2 | mRNA | downstream | 115601 | 11695631 ~ 11753218 (+) | False | LOC113526407 |
| XM_034312220.1 | mRNA | downstream | 115601 | 11695631 ~ 11753218 (+) | False | LOC113526407 |
| TU29627 | other | upstream | 671166 | 10906200 ~ 10908572 (+) | True | G25029 |
| XR_003403740.2 | other | upstream | 825116 | 10754515 ~ 10754622 (+) | True | LOC113537259 |
| TU29055 | other | upstream | 1381283 | 10197966 ~ 10198455 (+) | True | G24500 |
| TU28879 | other | upstream | 1672567 | 9895245 ~ 9907171 (+) | False | LOC113530691 |
| XR_004577034.1 | other | upstream | 1982884 | 9591941 ~ 9596854 (+) | False | LOC113532547 |
| TU30526 | other | downstream | 624499 | 12204529 ~ 12207257 (+) | False | si:dkeyp-67f1.2 |
| TU30617 | other | downstream | 946140 | 12526170 ~ 12527491 (+) | True | G25908 |
| TU31442 | other | downstream | 1685997 | 13266027 ~ 13331868 (+) | False | si:dkey-238f9.1 |
| XR_004577014.1 | other | downstream | 1915826 | 13495856 ~ 13499365 (+) | False | tshba |
| XR_004577009.1 | other | downstream | 1915827 | 13495857 ~ 13499365 (+) | False | tshba |
