Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU30080 |
| length | 243 |
| lncRNA type | inter_gene |
| GC content | 0.33 |
| exon number | 2 |
| gene id | G25434 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047596.1 |
| NCBI id | CM018542.1 |
| chromosome length | 35203048 |
| location | 11662230 ~ 11663094 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU30064 | lncRNA | upstream | 39161 | 11619169 ~ 11623069 (+) | True | G25422 |
| TU30052 | lncRNA | upstream | 76587 | 11585407 ~ 11585643 (+) | True | G25410 |
| TU30050 | lncRNA | upstream | 82200 | 11579738 ~ 11580030 (+) | True | G25408 |
| TU30029 | lncRNA | upstream | 176864 | 11484801 ~ 11485366 (+) | True | G25387 |
| TU30016 | lncRNA | upstream | 200885 | 11461122 ~ 11461345 (+) | True | G25374 |
| XR_004579590.1 | lncRNA | downstream | 5725 | 11668819 ~ 11688224 (+) | True | LOC117599151 |
| TU30103 | lncRNA | downstream | 69330 | 11732424 ~ 11792125 (+) | True | G25452 |
| XR_003403548.2 | lncRNA | downstream | 140496 | 11803590 ~ 11805459 (+) | True | LOC113534932 |
| TU30282 | lncRNA | downstream | 282999 | 11946093 ~ 12038014 (+) | True | G25624 |
| XR_003403381.2 | lncRNA | downstream | 294134 | 11957228 ~ 11974989 (+) | False | LOC113533008 |
| XM_026922402.2 | mRNA | upstream | 83099 | 11536329 ~ 11579131 (+) | False | arhgap9 |
| XM_026922392.2 | mRNA | upstream | 83099 | 11538020 ~ 11579131 (+) | True | arhgap9 |
| XM_026925428.2 | mRNA | upstream | 141320 | 11517494 ~ 11520910 (+) | True | ddit3 |
| XM_026919915.2 | mRNA | upstream | 161714 | 11486737 ~ 11500516 (+) | False | dctn2 |
| XM_034312199.1 | mRNA | downstream | 32537 | 11695631 ~ 11753218 (+) | True | LOC113526407 |
| XM_034312206.1 | mRNA | downstream | 32537 | 11695631 ~ 11753218 (+) | False | LOC113526407 |
| XM_034312208.1 | mRNA | downstream | 32537 | 11695631 ~ 11753218 (+) | False | LOC113526407 |
| XM_026913468.2 | mRNA | downstream | 32537 | 11695631 ~ 11753218 (+) | False | LOC113526407 |
| XM_034312220.1 | mRNA | downstream | 32537 | 11695631 ~ 11753218 (+) | False | LOC113526407 |
| TU29627 | other | upstream | 753658 | 10906200 ~ 10908572 (+) | True | G25029 |
| XR_003403740.2 | other | upstream | 907608 | 10754515 ~ 10754622 (+) | True | LOC113537259 |
| TU29055 | other | upstream | 1463775 | 10197966 ~ 10198455 (+) | True | G24500 |
| TU28879 | other | upstream | 1755059 | 9895245 ~ 9907171 (+) | False | LOC113530691 |
| XR_004577034.1 | other | upstream | 2065376 | 9591941 ~ 9596854 (+) | False | LOC113532547 |
| TU30526 | other | downstream | 541435 | 12204529 ~ 12207257 (+) | False | si:dkeyp-67f1.2 |
| TU30617 | other | downstream | 863076 | 12526170 ~ 12527491 (+) | True | G25908 |
| TU31442 | other | downstream | 1602933 | 13266027 ~ 13331868 (+) | False | si:dkey-238f9.1 |
| XR_004577014.1 | other | downstream | 1832762 | 13495856 ~ 13499365 (+) | False | tshba |
| XR_004577009.1 | other | downstream | 1832763 | 13495857 ~ 13499365 (+) | False | tshba |
