Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU30103 |
| length | 1143 |
| lncRNA type | read_through |
| GC content | 0.39 |
| exon number | 2 |
| gene id | G25452 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047596.1 |
| NCBI id | CM018542.1 |
| chromosome length | 35203048 |
| location | 11732424 ~ 11792125 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | description |
|---|---|
| ko00310 | Lysine degradation |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004579590.1 | lncRNA | upstream | 44200 | 11668819 ~ 11688224 (+) | True | LOC117599151 |
| TU30080 | lncRNA | upstream | 69330 | 11662230 ~ 11663094 (+) | True | G25434 |
| TU30064 | lncRNA | upstream | 109355 | 11619169 ~ 11623069 (+) | True | G25422 |
| TU30052 | lncRNA | upstream | 146781 | 11585407 ~ 11585643 (+) | True | G25410 |
| TU30050 | lncRNA | upstream | 152394 | 11579738 ~ 11580030 (+) | True | G25408 |
| XR_003403548.2 | lncRNA | downstream | 11465 | 11803590 ~ 11805459 (+) | True | LOC113534932 |
| TU30282 | lncRNA | downstream | 153968 | 11946093 ~ 12038014 (+) | True | G25624 |
| XR_003403381.2 | lncRNA | downstream | 165103 | 11957228 ~ 11974989 (+) | False | LOC113533008 |
| XR_003403384.2 | lncRNA | downstream | 165128 | 11957253 ~ 11974989 (+) | True | LOC113533008 |
| TU30578 | lncRNA | downstream | 482727 | 12274852 ~ 12275052 (+) | True | G25872 |
| XM_026922402.2 | mRNA | upstream | 153293 | 11536329 ~ 11579131 (+) | False | arhgap9 |
| XM_026922392.2 | mRNA | upstream | 153293 | 11538020 ~ 11579131 (+) | True | arhgap9 |
| XM_026925428.2 | mRNA | upstream | 211514 | 11517494 ~ 11520910 (+) | True | ddit3 |
| XM_026919915.2 | mRNA | upstream | 231908 | 11486737 ~ 11500516 (+) | False | dctn2 |
| XM_026947319.2 | mRNA | downstream | 40582 | 11832707 ~ 11892740 (+) | True | LOC113547077 |
| XM_026947391.2 | mRNA | downstream | 40582 | 11832707 ~ 11892740 (+) | False | LOC113547077 |
| XM_026923995.2 | mRNA | downstream | 110093 | 11902218 ~ 11937563 (+) | True | shmt2 |
| XM_026927376.2 | mRNA | downstream | 228121 | 12020246 ~ 12026634 (+) | True | h6pd |
| XM_026917519.2 | mRNA | downstream | 239922 | 12032047 ~ 12035789 (+) | True | cenps |
| TU29627 | other | upstream | 823852 | 10906200 ~ 10908572 (+) | True | G25029 |
| XR_003403740.2 | other | upstream | 977802 | 10754515 ~ 10754622 (+) | True | LOC113537259 |
| TU29055 | other | upstream | 1533969 | 10197966 ~ 10198455 (+) | True | G24500 |
| TU28879 | other | upstream | 1825253 | 9895245 ~ 9907171 (+) | False | LOC113530691 |
| XR_004577034.1 | other | upstream | 2135570 | 9591941 ~ 9596854 (+) | False | LOC113532547 |
| TU30526 | other | downstream | 412404 | 12204529 ~ 12207257 (+) | False | si:dkeyp-67f1.2 |
| TU30617 | other | downstream | 734045 | 12526170 ~ 12527491 (+) | True | G25908 |
| TU31442 | other | downstream | 1473902 | 13266027 ~ 13331868 (+) | False | si:dkey-238f9.1 |
| XR_004577014.1 | other | downstream | 1703731 | 13495856 ~ 13499365 (+) | False | tshba |
| XR_004577009.1 | other | downstream | 1703732 | 13495857 ~ 13499365 (+) | False | tshba |
