RNA id: TU30654


Basic Information

Item Value
RNA id TU30654
length 1018
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G25939
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 12474711 ~ 12475823 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATAGCCCCCttatatttcataataaatCACTACAACTCCACACATAAGAGCTGAACTCCAAGAGACACTGTGTGTATAAACATGTAATGTGAAACTTCATCTGAGAGCCATATTTCACTGAGTGCCCCATGGACACTTCTGGGTGAAATACCAGCCTCCCCATTTGCTAGTAGTAAACCTCATGCAGCCTATCTGTCAAATGTGGTACTGATATTCAGGCATGTGAATCTTGCAGTTATGGCTGTGAATGTAGGACAAAATTACTTAATAATTagctttaaaaatgttagtATTTCAGATAAAACTCATGagacttttatatattttttttttttttaaagcgcaGAATTAAAGTTCTTTGCTTCAAGAGGCTTGAAAGGTTTGACACAATACACATGTGCATGATGGGAATTTTACTGTGGTGAATATAAATGTAACCCATTTTTACATGCCATTGATTGCCTTACATGTAGTAAGTTTAAAGAAACAACGCTGGAGTGGAGAAACAGCTTTATATAGTTTCTAAACTCATAGTTATAGTGAGTAAATTTTTACAGCAAGCATATTATATAAGCATCCTGTGAGATATCTGCAGAAAATCTAGCTCCTCTTTAGTTACTTGCATAAAGGTAAGTCAGTTATATTTTTCTTCCAAGCATCCACAGTGTAGGATCCCATTATTAACACACAGAAGTTCCCCCCAGATCAGCCAGAGTTCAATCtttaactttaagttgGTGGAGCACTCTGTTTTCCAAATGAGTCGACTGCAACCAATTTATATTCACCAGCATCTTTGAGCTCCACTCTGAGGATGTACATGGAGCACACACCATGTAGTAACGTTTATTAGAGTTGATGCAGATGCCATTCGGGTACCAAGAAACATGGGTGTGGGGCAGCTTTGAACAGCACAGGTCATATAGCACTGGTAGCTCTTTGGTGAAGTGTGGACTTTCAGCGGAACCAAAATAGAGGGTGGCCTCTCAAAAGTGATCATGGCTGGCAGAGTTCTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30616 lncRNA upstream 66188 12408321 ~ 12408523 (+) True G25907
XR_004580102.1 lncRNA upstream 165211 12302924 ~ 12309500 (+) True LOC117599716
TU30592 lncRNA upstream 178669 12295611 ~ 12296042 (+) True G25886
TU30588 lncRNA upstream 181582 12292923 ~ 12293129 (+) True G25882
TU30578 lncRNA upstream 199659 12274852 ~ 12275052 (+) True G25872
TU30618 lncRNA downstream 33816 12509639 ~ 12512658 (+) True G25909
TU30789 lncRNA downstream 253170 12728993 ~ 12730570 (+) False si:ch211-286o17.1
XR_004577066.1 lncRNA downstream 282676 12758499 ~ 12762286 (+) True LOC117595882
TU30981 lncRNA downstream 319265 12795088 ~ 12795301 (+) True G26229
TU30983 lncRNA downstream 321873 12797696 ~ 12798029 (+) True G26231
XM_026918367.2 mRNA upstream 42574 12422156 ~ 12432137 (+) True tespa1
XM_026918386.2 mRNA upstream 42574 12422156 ~ 12432137 (+) False tespa1
XM_026918377.2 mRNA upstream 42574 12422639 ~ 12432137 (+) False tespa1
XM_034313392.1 mRNA upstream 42574 12422639 ~ 12432137 (+) False tespa1
XM_026918394.2 mRNA upstream 44254 12422155 ~ 12430457 (+) False tespa1
XM_034313861.1 mRNA downstream 253620 12729443 ~ 12751277 (+) True si:ch211-286o17.1
XM_026928420.2 mRNA downstream 258828 12734651 ~ 12750607 (+) False si:ch211-286o17.1
XM_026925720.2 mRNA downstream 457835 12933658 ~ 12949604 (+) True padi2
XM_026925727.2 mRNA downstream 459620 12935443 ~ 12948621 (+) False padi2
XM_034297994.1 mRNA downstream 611117 13086940 ~ 13117556 (+) True phc2b
TU30526 other upstream 267454 12204529 ~ 12207257 (+) False si:dkeyp-67f1.2
TU29627 other upstream 1566139 10906200 ~ 10908572 (+) True G25029
XR_003403740.2 other upstream 1720089 10754515 ~ 10754622 (+) True LOC113537259
TU29055 other upstream 2276256 10197966 ~ 10198455 (+) True G24500
TU28879 other upstream 2567540 9895245 ~ 9907171 (+) False LOC113530691
TU30617 other downstream 50347 12526170 ~ 12527491 (+) True G25908
TU31442 other downstream 790204 13266027 ~ 13331868 (+) False si:dkey-238f9.1
XR_004577014.1 other downstream 1020033 13495856 ~ 13499365 (+) False tshba
XR_004577009.1 other downstream 1020034 13495857 ~ 13499365 (+) False tshba
XR_004577011.1 other downstream 1020034 13495857 ~ 13499365 (+) False tshba

Expression Profile