RNA id: TU30983


Basic Information

Item Value
RNA id TU30983
length 334
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G26231
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 12797696 ~ 12798029 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCAATGCAAGGTTTTCAATCATTGAAAAAGTGAACAGCATTGTGTTTTTAACTGTAAAttttcatgtgtgttttgttcactTTACTTGCCTCCAGGTGGTGGTTTGCTTTTGGAAGTGAGAATGACAAAGCCAAAGCCTTCGTTATCTTTGCGATGGAGTGTAATATCCATCATTTCATGGTCCAAGACACTTGGGACTTGAACACGTGGGGTTTTTGGAGAACCATTCATTAGCGCTGGAGCCAGGTTCCGTGCCCCATCATCATCAGACACATCTGTGAAggacatatatgtatatgtcaCACTTAGTAAGCATGGATGCTTTTGTTTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30981 lncRNA upstream 2395 12795088 ~ 12795301 (+) True G26229
XR_004577066.1 lncRNA upstream 35410 12758499 ~ 12762286 (+) True LOC117595882
TU30789 lncRNA upstream 67126 12728993 ~ 12730570 (+) False si:ch211-286o17.1
TU30618 lncRNA upstream 285038 12509639 ~ 12512658 (+) True G25909
TU30654 lncRNA upstream 321873 12474711 ~ 12475823 (+) True G25939
TU30985 lncRNA downstream 1589 12799618 ~ 12799854 (+) True G26233
TU31025 lncRNA downstream 57367 12855396 ~ 12908094 (+) True G26266
XR_003403407.2 lncRNA downstream 553817 13351846 ~ 13374496 (+) False LOC113533310
XR_003403408.2 lncRNA downstream 553817 13351846 ~ 13373810 (+) True LOC113533310
XR_003403409.2 lncRNA downstream 553817 13351846 ~ 13373810 (+) False LOC113533310
XM_034313861.1 mRNA upstream 46419 12729443 ~ 12751277 (+) True si:ch211-286o17.1
XM_026928420.2 mRNA upstream 47089 12734651 ~ 12750607 (+) False si:ch211-286o17.1
XM_026918367.2 mRNA upstream 365559 12422156 ~ 12432137 (+) True tespa1
XM_026925720.2 mRNA downstream 135629 12933658 ~ 12949604 (+) True padi2
XM_026925727.2 mRNA downstream 137414 12935443 ~ 12948621 (+) False padi2
XM_034297994.1 mRNA downstream 288911 13086940 ~ 13117556 (+) True phc2b
XM_034297989.1 mRNA downstream 288911 13086940 ~ 13117556 (+) False phc2b
XM_034297980.1 mRNA downstream 288912 13086941 ~ 13117556 (+) False phc2b
TU30617 other upstream 270205 12526170 ~ 12527491 (+) True G25908
TU30526 other upstream 590439 12204529 ~ 12207257 (+) False si:dkeyp-67f1.2
TU29627 other upstream 1889124 10906200 ~ 10908572 (+) True G25029
XR_003403740.2 other upstream 2043074 10754515 ~ 10754622 (+) True LOC113537259
TU29055 other upstream 2599241 10197966 ~ 10198455 (+) True G24500
TU31442 other downstream 467998 13266027 ~ 13331868 (+) False si:dkey-238f9.1
XR_004577014.1 other downstream 697827 13495856 ~ 13499365 (+) False tshba
XR_004577009.1 other downstream 697828 13495857 ~ 13499365 (+) False tshba
XR_004577011.1 other downstream 697828 13495857 ~ 13499365 (+) False tshba
XR_004577010.1 other downstream 698053 13496082 ~ 13499365 (+) False tshba

Expression Profile