RNA id: TU30985


Basic Information

Item Value
RNA id TU30985
length 237
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G26233
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 12799618 ~ 12799854 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTCACTTGCATACCTCTCTGTCCAGACTCCTGTGCAGTGCCTTTGAGCTTGCTCTGGCGGAGGGTGACATCTCGTCTCGGAGAGCTACTGGGTAACGTGCTTGAATAATATGTGAGGGCTTGGGGGGCTCCGACATCATGGCATTGGTCCAAAGTCTCAAGGCTGGCACTTATTTCCTGTCTCTACAGGGCACAATTAGAAAGTGCATGCTTTTAAGGCAAGTTTTCAACTTTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30983 lncRNA upstream 1589 12797696 ~ 12798029 (+) True G26231
TU30981 lncRNA upstream 4317 12795088 ~ 12795301 (+) True G26229
XR_004577066.1 lncRNA upstream 37332 12758499 ~ 12762286 (+) True LOC117595882
TU30789 lncRNA upstream 69048 12728993 ~ 12730570 (+) False si:ch211-286o17.1
TU30618 lncRNA upstream 286960 12509639 ~ 12512658 (+) True G25909
TU31025 lncRNA downstream 55542 12855396 ~ 12908094 (+) True G26266
XR_003403407.2 lncRNA downstream 551992 13351846 ~ 13374496 (+) False LOC113533310
XR_003403408.2 lncRNA downstream 551992 13351846 ~ 13373810 (+) True LOC113533310
XR_003403409.2 lncRNA downstream 551992 13351846 ~ 13373810 (+) False LOC113533310
TU31569 lncRNA downstream 635050 13434904 ~ 13517403 (+) True G26749
XM_034313861.1 mRNA upstream 48341 12729443 ~ 12751277 (+) True si:ch211-286o17.1
XM_026928420.2 mRNA upstream 49011 12734651 ~ 12750607 (+) False si:ch211-286o17.1
XM_026918367.2 mRNA upstream 367481 12422156 ~ 12432137 (+) True tespa1
XM_026925720.2 mRNA downstream 133804 12933658 ~ 12949604 (+) True padi2
XM_026925727.2 mRNA downstream 135589 12935443 ~ 12948621 (+) False padi2
XM_034297994.1 mRNA downstream 287086 13086940 ~ 13117556 (+) True phc2b
XM_034297989.1 mRNA downstream 287086 13086940 ~ 13117556 (+) False phc2b
XM_034297980.1 mRNA downstream 287087 13086941 ~ 13117556 (+) False phc2b
TU30617 other upstream 272127 12526170 ~ 12527491 (+) True G25908
TU30526 other upstream 592361 12204529 ~ 12207257 (+) False si:dkeyp-67f1.2
TU29627 other upstream 1891046 10906200 ~ 10908572 (+) True G25029
XR_003403740.2 other upstream 2044996 10754515 ~ 10754622 (+) True LOC113537259
TU29055 other upstream 2601163 10197966 ~ 10198455 (+) True G24500
TU31442 other downstream 466173 13266027 ~ 13331868 (+) False si:dkey-238f9.1
XR_004577014.1 other downstream 696002 13495856 ~ 13499365 (+) False tshba
XR_004577009.1 other downstream 696003 13495857 ~ 13499365 (+) False tshba
XR_004577011.1 other downstream 696003 13495857 ~ 13499365 (+) False tshba
XR_004577010.1 other downstream 696228 13496082 ~ 13499365 (+) False tshba

Expression Profile