RNA id: XM_026921629.2


Basic Information

Item Value
RNA id XM_026921629.2
length 2401
RNA type mRNA
GC content 0.38
exon number 3
gene id tshba
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 13490161 ~ 13506004 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAGATATCCTTGTCACACACTGCTCCATGCAATTGTTAAATACAGCTTTTATAACCAGGTTCATAAAACAGGTTTTGCTGACGTAGAGGACGGTAAGAGTGCACAAAGCTTAGCACAATATTCAAAAGATAACACCATTTTTGTGTGAGAACATGCTTGCTGTTTGACCAGATTGTTCTTTCTGTGACTCATAAACCACAAAAAAGGCTACATAAATTACTCTTTTTTACACATATGTTAAGATACTGGAAAGAGACTAgaatttttaattctgtttaattcttCATTTACAGTGTTGGAACTGCATGACATTTTCCTAAATACCCTTTTCCATGAATTATTCACAGAATATAAACAGTGTATATGCACTGGATATACTTGTTTTTTAATGTAGCTGTTGATTACTGTTTCCATTATCAACATATGAAAACATGCTACATCAGGACATATAACCAGGAAAGTAGGGAGCCAGTGATCACTCGCTCAGCTACACTAACATTCTTTGTCCACTGCTCATTCCTACACAAATACATGGGGTGTTCTTGTACTACTCTGCAATGAATACACTGCATACTCCACTGCTTTAAGAATAACtaattttggaaaaatattaaacttctTTATGCTGCTTAGAAATGTGGTTAAGCTACAATTTAGTAACTCAGTTTCTCACTAGGTGTATATTCAAATTTCCTAGAAGTGAAGCTTTTACACTGCCGTATTTAACTCTTAAGTGGATACCATGGATAGTTAGTGACCCATGACCTCATCTCCCTCCTTTGCTCCCCCTCACCTTTTTCTGTTACTGTCAGTTAGGCCCCCACCTCTCAAGTATTCCTCCTCTTAGTTTTTTACAATTTTCCAATACCAGTCTAGAATTAgacaatttattttcactttctgtTAGATAAATACAGGACAAAATGATGATGTACAATTAGTCATGAGCATCTTTGCACAGTGTGTAACTCACTGTGTTTTAAATAGCCTAGTGCCTAACGATATACCTGTGCACAacttgttctgttctgttctgttctggtATATAtgcaacaaacaaaatacaaaaatagaacaatatatactgtattttattgtattgtgttattttgtttttgtcaacatctggcacatactgtatgtctgaaACTCCCTGTTCGTCAACTTTACTGCGTATTATTAAAGAAATTGTTCAACCTTTTTAGTAACGGCTTTGCTAAAATGTAAAGCAAACTGTTAGTATATAAACAAAACAGATTAATGCTTTGATCATGTAAATCTTAATATACTGAGTTTTACTGCGTAAGACCGACAGTATCTCATCTTTTACTAATAAATGATTATGGCTGTAAAATGACGTTAATTATTAGACCTTATGAAATAACAGCTGGCTGTAGCAGATTtcatggaaggaaaaaaaaacttgtgagGTCCTATATCACTCATATAATTGAGTACACATTCAGCTAATGTATGTATCATACTGCCATAACAGGTTGTAAAGATTACAGAGAAGAATGACATCATGTCCAAGCTctactactattattaaaaTTGAAGGCCCCTGACTAAGAAACAGCTCTGTTACTTTGAGCCGCACTTTGAATATGAGCATAGCAACAAGCACCAGCAGGCCTTTAGCATGGTCTAGcggtgtgtgtggtgagtgcaGCTGATTTGAGGACGAGGCAATGGTTTTATGAATGCTGCACTATGGGCAATCTGCAGATAAGTAGACAGTAGGATTAGGTTAGATAAGGGGGGATCAATATAAAAGCAGAATCCTCACAGAATGAACAGGAGTCTGGCTGCCAGGGTAATCAGCTTGTCCAGAGACATGATGTTTGCTCCTGTGTTAGTGGCTGGTATTCTAGGCCTTCTTGTTGGAACGGCTGTACCTATGTGTGTCCCGACAGAATACACTCTGTATGTTGAGAAGCAAGAGTGTGACTACTGTGTGGCCATCAACACCACAATATGCATGGGCTTCTGTTTTTCGAGGGACAGTAACATGAAAGAATTGGTGGGACCTCGCTTTCTAATCCAGAGGAGCTGTACGTATCAAGATGTGGAGTATCGTACAGCAGATTTGCCTGGCTGTTCCCCCCATGCTGATTCTCACTTCACCTACCCAATCGCTCTCAGCTGTCACTGCAGCATGTGTAACACACAAAGTGATGAGTGTGCCCACAAAACCAGATTCAGTGCAGCCAAGTGCTCCAAACCAGTCCAACATTTGTATCCCTATCCTGTGCAGAGTGACTACATCTAACCCAGCTTCAGTTATACTGTTGATAAAAGCTATATTTCAGAGTCAGATTGGACACTTGAAGACTTTGTTTTGACTTGATCTGTACATATAATAAAAACTATACATGTAATAAAAACATGTCTGCAGCCA

Function

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0005179 hormone activity molecular_function

KEGG:

id description
K05251 TSHB; thyrotropin subunit beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31582 lncRNA upstream 4617 13490161 ~ 13497729 (+) False tshba
XR_003403407.2 lncRNA upstream 127850 13351846 ~ 13374496 (+) False LOC113533310
XR_003403408.2 lncRNA upstream 128536 13351846 ~ 13373810 (+) True LOC113533310
XR_003403409.2 lncRNA upstream 128536 13351846 ~ 13373810 (+) False LOC113533310
TU31025 lncRNA upstream 594252 12855396 ~ 12908094 (+) True G26266
TU31688 lncRNA downstream 120477 13626481 ~ 13629466 (+) True G26848
TU31730 lncRNA downstream 316380 13822384 ~ 13825226 (+) True G26873
TU31732 lncRNA downstream 328235 13834239 ~ 13836347 (+) True G26875
TU31741 lncRNA downstream 367311 13873315 ~ 13873523 (+) True G26884
TU31779 lncRNA downstream 494927 14000931 ~ 14054690 (+) True G26921
XM_034300793.1 mRNA upstream 12269 13467442 ~ 13490077 (+) True sycp1
XM_026929119.2 mRNA upstream 36025 13456562 ~ 13466321 (+) True LOC113535652
XM_026941676.2 mRNA upstream 54217 13441193 ~ 13448129 (+) True LOC113543455
XM_026924017.2 mRNA upstream 170169 13265788 ~ 13332177 (+) True si:dkey-238f9.1
XM_034312744.1 mRNA downstream 4324 13510328 ~ 13515529 (+) False slc25a55a
XM_034312745.1 mRNA downstream 5569 13511573 ~ 13515529 (+) True slc25a55a
XM_026927279.2 mRNA downstream 64755 13570759 ~ 13578479 (+) True LOC113534455
XM_026927289.2 mRNA downstream 64755 13570759 ~ 13578479 (+) False LOC113534455
XM_026927047.2 mRNA downstream 79088 13585092 ~ 13590794 (+) True LOC113534264
XR_004577012.1 other upstream 1050 13498298 ~ 13501296 (+) False tshba
XR_004577009.1 other upstream 2981 13495857 ~ 13499365 (+) False tshba
trnaf-gaa_15 other downstream 1685580 15191584 ~ 15191656 (+) True trnaf-gaa_15
XR_004580083.1 other downstream 1772823 15278827 ~ 15294354 (+) False fancd2
TU33403 other downstream 2675314 16181318 ~ 16182303 (+) False mustn1a
TU34871 other downstream 5268766 18774770 ~ 18826920 (+) False G29569
trnai-aau other downstream 5311398 18817402 ~ 18817475 (+) True trnai-aau

Expression Profile