Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004577013.1 |
| length | 591 |
| RNA type | misc_RNA |
| GC content | 0.46 |
| exon number | 5 |
| gene id | tshba |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047596.1 |
| NCBI id | CM018542.1 |
| chromosome length | 35203048 |
| location | 13490161 ~ 13506004 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0034220 | ion transmembrane transport | biological_process |
| GO:0015718 | monocarboxylic acid transport | biological_process |
| GO:0006814 | sodium ion transport | biological_process |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0015293 | symporter activity | molecular_function |
| GO:0015355 | secondary active monocarboxylate transmembrane transporter activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_003403407.2 | lncRNA | upstream | 121658 | 13351846 ~ 13374496 (+) | False | LOC113533310 |
| XR_003403408.2 | lncRNA | upstream | 122344 | 13351846 ~ 13373810 (+) | True | LOC113533310 |
| XR_003403409.2 | lncRNA | upstream | 122344 | 13351846 ~ 13373810 (+) | False | LOC113533310 |
| TU31025 | lncRNA | upstream | 588060 | 12855396 ~ 12908094 (+) | True | G26266 |
| TU30985 | lncRNA | upstream | 696300 | 12799618 ~ 12799854 (+) | True | G26233 |
| TU31688 | lncRNA | downstream | 127116 | 13626481 ~ 13629466 (+) | True | G26848 |
| TU31730 | lncRNA | downstream | 323019 | 13822384 ~ 13825226 (+) | True | G26873 |
| TU31732 | lncRNA | downstream | 334874 | 13834239 ~ 13836347 (+) | True | G26875 |
| TU31741 | lncRNA | downstream | 373950 | 13873315 ~ 13873523 (+) | True | G26884 |
| TU31779 | lncRNA | downstream | 501566 | 14000931 ~ 14054690 (+) | True | G26921 |
| XM_034300793.1 | mRNA | upstream | 6077 | 13467442 ~ 13490077 (+) | True | sycp1 |
| XM_026929119.2 | mRNA | upstream | 29833 | 13456562 ~ 13466321 (+) | True | LOC113535652 |
| XM_026941676.2 | mRNA | upstream | 48025 | 13441193 ~ 13448129 (+) | True | LOC113543455 |
| XM_026924017.2 | mRNA | upstream | 163977 | 13265788 ~ 13332177 (+) | True | si:dkey-238f9.1 |
| XM_026921637.2 | mRNA | downstream | 2842 | 13502207 ~ 13506004 (+) | False | tshba |
| XM_026921629.2 | mRNA | downstream | 2981 | 13502346 ~ 13506004 (+) | True | tshba |
| XM_034312744.1 | mRNA | downstream | 10963 | 13510328 ~ 13515529 (+) | False | slc25a55a |
| XM_034312745.1 | mRNA | downstream | 12208 | 13511573 ~ 13515529 (+) | True | slc25a55a |
| XM_026927279.2 | mRNA | downstream | 71394 | 13570759 ~ 13578479 (+) | True | LOC113534455 |
| TU31442 | other | upstream | 164286 | 13266027 ~ 13331868 (+) | False | si:dkey-238f9.1 |
| TU30617 | other | upstream | 968663 | 12526170 ~ 12527491 (+) | True | G25908 |
| TU30526 | other | upstream | 1288897 | 12204529 ~ 12207257 (+) | False | si:dkeyp-67f1.2 |
| TU29627 | other | upstream | 2587582 | 10906200 ~ 10908572 (+) | True | G25029 |
| XR_003403740.2 | other | upstream | 2741532 | 10754515 ~ 10754622 (+) | True | LOC113537259 |
| trnaf-gaa_15 | other | downstream | 1692219 | 15191584 ~ 15191656 (+) | True | trnaf-gaa_15 |
| XR_004580083.1 | other | downstream | 1779462 | 15278827 ~ 15294354 (+) | False | fancd2 |
| TU33403 | other | downstream | 2681953 | 16181318 ~ 16182303 (+) | False | mustn1a |
| TU34871 | other | downstream | 5275405 | 18774770 ~ 18826920 (+) | False | G29569 |
| trnai-aau | other | downstream | 5318037 | 18817402 ~ 18817475 (+) | True | trnai-aau |
