RNA id: TU31688


Basic Information

Item Value
RNA id TU31688
length 2886
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G26848
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 13626481 ~ 13629466 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTCACtcgtgttatttatttatactcaCTGTTCAGTACAAGAGTTTTAACAAagaggagaatttttttttattaaagacactGGTCTGAGAAACTAACAGTAAATATGTTTAACTGAAAGTTAACACAACACAGCTATACTTTCGGGGCACGAGCTCGTCTGTATAATACACAAAGTCCTGGATGCAATGAGAaaattttgtttacattttagttatatttttaaCAGCAATAGTCTAAATTAAGCAATATTAATCCGACTATGATTAAACCTGCGGAAGAAACGTCACGTCTCATCAATATTTCAGGACACACAACCCCGGCACACTTCTCCTCCAACCAATCACGGGTTTGCATGTCATCCTTCGCAAGGGTCATGCTCATCTCCCTTCAATCCATCCAATTTTAGTGCACGTGCTGCTGCCAGCCAATCAGCGCTCCCCCGacacacagaaccacacacatacacacacacaacgcgcGCAAAGTACAGTATACACCAGGCTTTATCCCATACCCAATAAAAATGATCAAgttcatattttaattatgtaaaCAATTCAAGTGAAtgagttaaaaatgttttttttttttaggtgtaaGATGAATTGTTCATTTTGACAAATAAGGTCTTATACAAGCAGACACCATATTATACAGGCAGTTTGAGGCAAATATAATCCTCAGTACTTCTATGCTTAAAAACAGCAGGTAGTAAGAACCTCTTGGGTATAAAACATACGTAAATCTATAAAATGTATGGAATAAGTGgacttaatatttgaatagaaaTGTAATACACTCATTCAAGTTCAAATGTTTTGgccaatttttcaatttttattgtttttaaaggaaaacaagAAAGATTAATCAAAGAGACCAAAGCCCATGTCTTCATCAGACTCTTCAgattcttctttcttctcctcctttttctcttccgctTGCAGGTGCTGCTCCAGCTGCAGGAGCCCCACCAccaggagcagcagcagagaCCGCCACAGCACCACCCGCTGGCACGGAGGCTAACTTGGAGAGGCCTACAGAAATGTGTGCTAGTAACTATTTTGGCTCAGGGATATTCACTTCACACTCATAAGAAGCCAGACTGCTTAAGAAAAGCAAAAGGCAACATACCTGCATTCATGACTTCATTGATGTCCTTGCCATTTAATTCACTGATGACCTGTTCAGTTAAACAAAGAACAGTACAGTCTACAACACAATGCAATTCCAGCATTATTCCTCATAACCACATGACTTCAACAATAGGCAAAAATACTTGTTATAAAGGTCTTGAAAGGTATAGATTTTGAAAGAAGACAGTGGGGATACCTTATTGAGACGTTCATCCTCGGCCTCAATTCCTACACTCCCCAGGATGTTCTTGATATCCTTGGAGGAGGGATTGGTGTTGCCACCCAGCACAGCCAAAAGGTAAGCGGCCACGTAACGCATTCTGGAAAAAATAAGCagaatttttattacaaaattgaACAAAAATGCAGTTGGTTTAAAGGACGTCTGTTTTAACTCAAAACTAAATCATGACAGCCTCCGAACAAACCTTACTTATACAACATAAGTAGCTTTTCTGTTCGGTGCTTCTGCTCAGTGGGCACAATTACactcatttaaacacaaatatagaCAAATCTGAAATATGGACAAAGTTGCTGAGcactctttatatttatttaaaaaatgttatttactgcatgtttattaaaatatttaccatATTAAATCAGTCCTCAGAACCTGACGCTGAgactttttaaacattgttctgaatttttatattgatttatcTTATATTACATCAATTTCCCAATGATTACAATACTTTTAATGAGTGActtgtcatgctttttaaccatttatactTATACCCCTGAAActagttactgttatcacttgcattataacCGCTATAAACAATCCCTTACCTgcctttacttttatttctattttttaattatacaaaaatTGCAGTTTGTCATGTAACAGAGAACCCACAAAGACAGCAGAGTTTGTGGAAAccttgctgacactggagactccttcattaaaatgtttaaagctTCACCaagttatacatttttctttgttaaatgagtttttaatctgtttattaaacctgaaatatagctgttactgctgtcagagctgctgttacaacttctgaccaatcagaatcgagagtTTTCTGGAGACGCGCTCTGGtataaaacaacagcaacaatgtTCAGTCCACACAATGTTGCGCTCCACGAGGCCGGTGCTTACCCTCTAACTGCttgctaaaatattttcaaatatatatatatatacacatatatattttttttactttttaaaaaagtaataacgGCGCCATTTTGGAAGCGTGCTAGTCCTAGCGGTTGAGCTAACCTACTTAGCTCGCTGGCTAGCCCGGGCCTGTCTTTATTTAGCCAAGCCCTTGTATGGAGGCAACGCGGATTACTCCTTCTAAACTAACTTTAAACACTTCACACTAATGATACATATTTACACTGACAGTTGTGAATACTAGgtatttcattataatgatcGTAGGGTTTTGCTTCCGAACCGATGAACTGTAATGCCCTGTAAGACTTGGCAACAAAATGGAGAGGAGCGCGGCATGGCCACCAGGCTAGCTGTCAACAAGCTGACTAGCAATGGCGAGCTGAAGAGGGAGGACATCTAGTGTTTACCACGTTTCCTGAAATTAAAGGCAAAACTACGCTGCTTTAATTGTAATGTGTTAATCTATTTACTGTTAGTGAtcgtatttaaataaaaacgaGAGTTGTAGACTGAAAATAACTTACTTTAAGTCTGTGAAAGACCCGAAACGTTGGACACGCTGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31569 lncRNA upstream 109078 13434904 ~ 13517403 (+) True G26749
TU31582 lncRNA upstream 128752 13490161 ~ 13497729 (+) False tshba
XR_003403407.2 lncRNA upstream 251985 13351846 ~ 13374496 (+) False LOC113533310
XR_003403408.2 lncRNA upstream 252671 13351846 ~ 13373810 (+) True LOC113533310
XR_003403409.2 lncRNA upstream 252671 13351846 ~ 13373810 (+) False LOC113533310
TU31730 lncRNA downstream 192918 13822384 ~ 13825226 (+) True G26873
TU31732 lncRNA downstream 204773 13834239 ~ 13836347 (+) True G26875
TU31741 lncRNA downstream 243849 13873315 ~ 13873523 (+) True G26884
TU31779 lncRNA downstream 371465 14000931 ~ 14054690 (+) True G26921
TU32056 lncRNA downstream 540314 14169780 ~ 14172077 (+) True G27164
XM_026939261.2 mRNA upstream 2310 13620324 ~ 13624171 (+) True LOC113541997
XM_034309834.1 mRNA upstream 13600 13596849 ~ 13612881 (+) False LOC113537237
XM_026931635.2 mRNA upstream 13600 13596849 ~ 13612881 (+) True LOC113537237
XM_034309826.1 mRNA upstream 13600 13596849 ~ 13612881 (+) False LOC113537237
XM_026931644.2 mRNA upstream 13600 13596849 ~ 13612881 (+) False LOC113537237
XM_026917259.2 mRNA downstream 7531 13636997 ~ 13640777 (+) True LOC113528606
XM_034312959.1 mRNA downstream 7531 13636997 ~ 13640777 (+) False LOC113528606
XM_026917266.2 mRNA downstream 7712 13637178 ~ 13640777 (+) False LOC113528606
XM_034312965.1 mRNA downstream 7722 13637188 ~ 13640777 (+) False LOC113528606
XM_026917303.2 mRNA downstream 21927 13651393 ~ 13658672 (+) True arf3b
XR_004577012.1 other upstream 125185 13498298 ~ 13501296 (+) False tshba
XR_004577014.1 other upstream 127116 13495856 ~ 13499365 (+) False tshba
XR_004577009.1 other upstream 127116 13495857 ~ 13499365 (+) False tshba
XR_004577011.1 other upstream 127116 13495857 ~ 13499365 (+) False tshba
XR_004577010.1 other upstream 127116 13496082 ~ 13499365 (+) False tshba
trnaf-gaa_15 other downstream 1562118 15191584 ~ 15191656 (+) True trnaf-gaa_15
XR_004580083.1 other downstream 1649361 15278827 ~ 15294354 (+) False fancd2
TU33403 other downstream 2551852 16181318 ~ 16182303 (+) False mustn1a
TU34871 other downstream 5145304 18774770 ~ 18826920 (+) False G29569
trnai-aau other downstream 5187936 18817402 ~ 18817475 (+) True trnai-aau

Expression Profile