RNA id: TU31730


Basic Information

Item Value
RNA id TU31730
length 2843
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G26873
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 13822384 ~ 13825226 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttacaaattatatggaaatttaataaaatattctaaaagAAGTTGACTGTGAATTCCTGATCTGACACATTAATTCaagtactgtagtgtgtagctTCTCTAGACTAAACATTACAATATTTGAATAACACTCAGTTTTTATTGCTATTTCCCGTTTATGCTGCTATACTTCATACTTTTGTAGAACGTGGAACTATCCTCGATTTACAATAATCCACCGCTGTGGTAAGCAGCTCATTATGGCTCCTCAACTAATCTATTGTGTTGAGTGTTTAAGccattttatttccatcataGGAGATAATTTTTCATGCAAGAAGCGTAGAATTGAGTTAGAAACCTGCATCCAGATGTTTGGTGAAAGGTGGGAAAGTGAGCACTTTTGAGTCagttgagaaaaaaatgctttagaaCAATGTTCCTGAGCTCTCTTTGTTCTGACAAGTTGTCCTACCAATTGAGATGTCCTatgctaataaaacaaaacatacactatatgtccaaaagtatgtggacacctgaccatcacacctgtatgtgcttgttgaacatcccatttcaaaaccatgggcattaatatggatttaatccccctttgctgttatagtaacctccactcttctgggaaggctttccactagattttggaacgtggctatGGGTGTTTGCTCATACAGCATTAGtcagagcattagtgaggtcagacactgatgttgagtgaggaggcctgaTGTGCAGTCAGTGCtccagttcatcacaaaggtgttcagtagggtggagttcagggctctgtgcaggccactcgagttcttcatgacaccatgtcttcatgaaccttgctttgtgcacagggacgcTGTCTTACTGCaacatgtttgggccctttagttccagtgaagggaaattgtaatgctacagcatacaaagacattctttacaattgtgtgcttccaactttgtgacaacagcttggggaagaaccacatataggtgtgatggtcaggtggatggatggatggagcctttatttgtcacatatacattacagcacagtgaaattctttacTTTGCATATCCCAACTTGTTAGGAAGCTGagatcagagcacagggtcagccatgatacagcgcccctggagcagagagggttaagagccttgctcaagggcccaacagtggcaacGTGgaagtgctggggcttgaacccctgaccttctaatcagtaacccagagccttaactgttgtGCCACCACTGCCCTGCCAGGTGTCCATATATATTTTGATCATatagtgaaaaacaaactgttAGAACACAGGCAGGCAACCTTGTGAGGCTGTAATGTCACCTTTTCCCTGTACACTGCCTCTGACTATGGCGGTCTCAGTGTGCCCCCTGGTGTCAGTCAGTAGTACTGTTATGGTAATGGTATGGCTGATttcattcaatttaattcaattttatttgtatggaaCTTTTAACAATattcattgtcacaaagcagctttacaaaaatacgGATCTAGATTTAGATTCCTACTGAACCAGCCCAGAGGCGAcgaggaaaaactccatgaaactatatgaggaagaaaccttgaggggaaccagactcaaaagggaacctttTCTGGGTGGCACctgatagtgtgattataaatcattactcttccacagCGGTATAATATAAAGTCAAAAAGTACTCTGTGTTTTGAAGGGATGTTCATTTCATTAAGTTCATTAAGTGGCAGGCCTACACTAACAATAAcacagcctcaaacaaaatttgATTGGCTATTACACTTGACTTAttctataggctactatctagtgaataaCTCCTTAATAGGCAGTTGAAAGTCGACAATATATAGTCCTCCAGCGTACAGTCTAGTAGCTCCTTCTGAAGAGTTTCAGTCACAGGTCCATACAATCTATTCCAATACAATTCCATtttaatactaattacctcttttgagtgaccaacaattttaaaaaatgttgttatttgacagatataatcTGACGTTCTGCTGATTTGTTGCGTTTTCAGATGTAGCACAGCCATGGGGCAGTCTACTCACTGCTCCACTTAGCTTCCATAGAGATATTATTGCACCTAATGGTCCCATGATTGTGCAACTAGTGACCTATAGGGGTAGGATTTGTGCTGCCCATTGTTTCCCAATGGAATGgctgtggaaaagaaaaaacatgcctcccttttccaatgccaACATTTTtggggctagtttcaggtcttttgtgtgttttttgaatgtaattgggctggaaattttgttGAAACATgacaaccctggttaatgatattacctcgAAGAGCTGAACAAAGGTacttactcaaaaaaaaaaaaaaaactgtctgcaTTGAGACGCAGATATCTGTAATATAAACCAGGCTGTACACTTTTGACAATGGAGTTTCAAAATACTAGACAAAATGTATCCAGTGAAACAGGTCTTAAAAAGATTTACTATGTTTATACTAGAATGCTTTGGATTGTTGTTTCAAGTTTATTAAGCAGAACCATAGAGGCAACAACTGAAGTCTAGTTATTTGATGTTATATTTTGTTACAAACCAGGCAAAAATGCCTGTTTTCTAATATGCTTATTTATCTTAATAGATAAATTTCACATCTGTAAGGCAAAGTGGTCCAAGAGTAGGCCGAACTATCACTATGCTTAAACAGTGCAACACCCTGGTATGGTCATCACAAAAAATCAAAACGCAGTcagaacatttaatttaataataacatataCAGCAAACTTTTGCTTGTTTAGTTACTACCCCAGGAATtttgattttgaattttgaagtgA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31688 lncRNA upstream 192918 13626481 ~ 13629466 (+) True G26848
TU31569 lncRNA upstream 304981 13434904 ~ 13517403 (+) True G26749
TU31582 lncRNA upstream 324655 13490161 ~ 13497729 (+) False tshba
XR_003403407.2 lncRNA upstream 447888 13351846 ~ 13374496 (+) False LOC113533310
XR_003403408.2 lncRNA upstream 448574 13351846 ~ 13373810 (+) True LOC113533310
TU31732 lncRNA downstream 9013 13834239 ~ 13836347 (+) True G26875
TU31741 lncRNA downstream 48089 13873315 ~ 13873523 (+) True G26884
TU31779 lncRNA downstream 175705 14000931 ~ 14054690 (+) True G26921
TU32056 lncRNA downstream 344554 14169780 ~ 14172077 (+) True G27164
TU32160 lncRNA downstream 644864 14470090 ~ 14470420 (+) True G27262
XM_026912846.2 mRNA upstream 901 13746014 ~ 13821483 (+) True plxnb1b
XM_026912864.2 mRNA upstream 901 13746014 ~ 13821483 (+) False plxnb1b
XM_026912873.2 mRNA upstream 901 13746014 ~ 13821483 (+) False plxnb1b
XM_026912854.2 mRNA upstream 901 13755817 ~ 13821483 (+) False plxnb1b
XM_034311880.1 mRNA upstream 901 13756091 ~ 13821483 (+) False plxnb1b
XM_026924315.2 mRNA downstream 2197 13827423 ~ 13834026 (+) True si:dkey-19e4.5
XM_034311769.1 mRNA downstream 11321 13836547 ~ 13864669 (+) False setd5
XM_034311755.1 mRNA downstream 11321 13836547 ~ 13864669 (+) False setd5
XM_034311750.1 mRNA downstream 11322 13836548 ~ 13864669 (+) True setd5
XM_034311762.1 mRNA downstream 11322 13836548 ~ 13864669 (+) False setd5
XR_004577012.1 other upstream 321088 13498298 ~ 13501296 (+) False tshba
XR_004577009.1 other upstream 323019 13495857 ~ 13499365 (+) False tshba
trnaf-gaa_15 other downstream 1366358 15191584 ~ 15191656 (+) True trnaf-gaa_15
XR_004580083.1 other downstream 1453601 15278827 ~ 15294354 (+) False fancd2
TU33403 other downstream 2356092 16181318 ~ 16182303 (+) False mustn1a
TU34871 other downstream 4949544 18774770 ~ 18826920 (+) False G29569
trnai-aau other downstream 4992176 18817402 ~ 18817475 (+) True trnai-aau

Expression Profile