RNA id: TU31741


Basic Information

Item Value
RNA id TU31741
length 209
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G26884
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 13873315 ~ 13873523 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGGTTGATCAGTAACAGTCTAATGGCATTTGCCAAAGCTTCAGCTCTTCAGCTCACATGAGCAGATGAGTGTGGGCTCGTAGAGCCTTCTGAGCGTTGCAATAATTTGATGGTTGAattattcaaacaaacaaaatagtgtagtatacagtacattatgtaTTAGTAATACTTAGTAGTAATACGAATAATTACTACCTTCTTTTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31732 lncRNA upstream 36968 13834239 ~ 13836347 (+) True G26875
TU31730 lncRNA upstream 48089 13822384 ~ 13825226 (+) True G26873
TU31688 lncRNA upstream 243849 13626481 ~ 13629466 (+) True G26848
TU31569 lncRNA upstream 355912 13434904 ~ 13517403 (+) True G26749
TU31582 lncRNA upstream 375586 13490161 ~ 13497729 (+) False tshba
TU31779 lncRNA downstream 127408 14000931 ~ 14054690 (+) True G26921
TU32056 lncRNA downstream 296257 14169780 ~ 14172077 (+) True G27164
TU32160 lncRNA downstream 596567 14470090 ~ 14470420 (+) True G27262
TU32167 lncRNA downstream 617257 14490780 ~ 14491136 (+) True G27269
TU32173 lncRNA downstream 622689 14496212 ~ 14496858 (+) True G27275
XM_034311769.1 mRNA upstream 8646 13836547 ~ 13864669 (+) False setd5
XM_034311755.1 mRNA upstream 8646 13836547 ~ 13864669 (+) False setd5
XM_034311750.1 mRNA upstream 8646 13836548 ~ 13864669 (+) True setd5
XM_034311762.1 mRNA upstream 8646 13836548 ~ 13864669 (+) False setd5
XM_034311759.1 mRNA upstream 8646 13836548 ~ 13864669 (+) False setd5
XM_026916723.2 mRNA downstream 38541 13912064 ~ 13930791 (+) True mtmr14
XM_026916732.2 mRNA downstream 38542 13912065 ~ 13930791 (+) False mtmr14
XM_034311785.1 mRNA downstream 57617 13931140 ~ 14018732 (+) False LOC113533199
XM_026925269.2 mRNA downstream 57617 13931140 ~ 14017600 (+) True LOC113533199
XM_034311792.1 mRNA downstream 57617 13931140 ~ 14017600 (+) False LOC113533199
XR_004577012.1 other upstream 372019 13498298 ~ 13501296 (+) False tshba
XR_004577009.1 other upstream 373950 13495857 ~ 13499365 (+) False tshba
trnaf-gaa_15 other downstream 1318061 15191584 ~ 15191656 (+) True trnaf-gaa_15
XR_004580083.1 other downstream 1405304 15278827 ~ 15294354 (+) False fancd2
TU33403 other downstream 2307795 16181318 ~ 16182303 (+) False mustn1a
TU34871 other downstream 4901247 18774770 ~ 18826920 (+) False G29569
trnai-aau other downstream 4943879 18817402 ~ 18817475 (+) True trnai-aau

Expression Profile