RNA id: TU32160


Basic Information

Item Value
RNA id TU32160
length 331
lncRNA type inter_gene
GC content 0.56
exon number 1
gene id G27262
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 14470090 ~ 14470420 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgggggcagtcgtggcctaatggatagagagtcggacttgcaacctgaaggtgaacctgaaggttgtgggttcgagtctcaggtccggcagggattgtaggtggggggagtgaatgaccagcgctctctcccaccctcaataccacgactgaggtgagacccttgagcaaggcaccaaacccccaactgctccctgggcgccgcagcaaaaaaggctgcccactgctccgggtgtgtgttcacggtgtgtgtgtgtgttcactactgtgtgtgtgcacttggatgggttaaatgcagagcacaaattccgagtatgggtcacttCACTTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32056 lncRNA upstream 298013 14169780 ~ 14172077 (+) True G27164
TU31779 lncRNA upstream 415400 14000931 ~ 14054690 (+) True G26921
TU31741 lncRNA upstream 596567 13873315 ~ 13873523 (+) True G26884
TU31732 lncRNA upstream 633743 13834239 ~ 13836347 (+) True G26875
TU31730 lncRNA upstream 644864 13822384 ~ 13825226 (+) True G26873
TU32167 lncRNA downstream 20360 14490780 ~ 14491136 (+) True G27269
TU32173 lncRNA downstream 25792 14496212 ~ 14496858 (+) True G27275
TU32208 lncRNA downstream 84831 14555251 ~ 14555465 (+) True G27309
TU32212 lncRNA downstream 91797 14562217 ~ 14604546 (+) True G27311
TU32379 lncRNA downstream 321991 14792411 ~ 14792622 (+) True G27450
XM_026922220.2 mRNA upstream 340907 14117983 ~ 14129183 (+) True LOC113531458
XM_026920665.2 mRNA upstream 356160 14100207 ~ 14113930 (+) True aldh1l1
XM_026919278.2 mRNA downstream 112907 14583327 ~ 14588319 (+) True myl9b
XM_026919289.2 mRNA downstream 112927 14583347 ~ 14588319 (+) False myl9b
XM_026918825.2 mRNA downstream 256737 14727157 ~ 14761927 (+) True quo
XM_026918833.2 mRNA downstream 256737 14727157 ~ 14761927 (+) False quo
XM_026918841.2 mRNA downstream 256737 14727157 ~ 14761927 (+) False quo
XR_004577012.1 other upstream 968794 13498298 ~ 13501296 (+) False tshba
XR_004577009.1 other upstream 970725 13495857 ~ 13499365 (+) False tshba
trnaf-gaa_15 other downstream 721164 15191584 ~ 15191656 (+) True trnaf-gaa_15
XR_004580083.1 other downstream 808407 15278827 ~ 15294354 (+) False fancd2
TU33403 other downstream 1710898 16181318 ~ 16182303 (+) False mustn1a
TU34871 other downstream 4304350 18774770 ~ 18826920 (+) False G29569
trnai-aau other downstream 4346982 18817402 ~ 18817475 (+) True trnai-aau

Expression Profile