RNA id: TU32669


Basic Information

Item Value
RNA id TU32669
length 1272
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G27705
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 15144705 ~ 15146155 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTGAAAGCTAAGTGCTCCAAGAAAAAGCCAGCACCGTTATTCTTCTCAGACTCATATCTGCTACCGACATTGATCCACAGGCCAAGTGCAGGTGCCATGACCTGTCGTCTCAGAGGCCACTCTCAGCCCATTCTCCAGCGTTGTGACCCGCGTCTCTGGAACACTCAGCAGGCTTTGGGCATAAGACACAGTTGCTTGTCCCCGTCTCAGAGAAAGCAGAACAGGctataaagacagacagagcaaaacaaacactgaaacatGATCGACTTCGCATGTCATCCTAGTTCCAAGACTGGTGAACAGAttagaaagaggaggaggaaaaaaaaaacaaaaaaaaaaaaaaccctatgcTCTATATGTCAGGTTGAAATTGTACTGGTTCCAGTCTATGAGAAACAAACTCAgggcttaaaaaaaataaaaaataaaaaaatctcagttttgGAGAAGAATCTGCAGGACTTATCTAGAGAAATCAATAGGGATGACAGTAAAAAATCTGCAAAAGAatgcaatgtttatttatttctttaattaattaataagctGTGTGGTTAATGAGATATTCAGCCCCAATCCAAAACTTTATGACTACAGAGTAAGGTTGGCAGAAATGGCAAAGCTCTTGGTGAATAATAGGTGAAGATCTTGTGTGCTAGCGCTCCAAATCAGCTAGAGTGTAATGCAGCTATAGCTGATAGCCGGGTCGTGTTGTATGACCTTGCGAGTGGTATGTATTTCACACACCTAACATTAGTCTTTAACCCAAACGCAGAAACACGGCTATTACTTTTCCAGAATCACTGCGCTGGTGCATGTGAACAACGAAACCAGTCTGAAACTAGCCGGTGGATTTGTTGACCTTCTAATGTtggctagctagcattagctacaCGGAGCAGCTAGCCATTATGCTAACTAGTCCGGTGATCTTTAGCTCTCCAAATCTACACCCACTATCGTActaaataatagtttaaaaacAGTAGTGCACCACAGTTTGTGCTCAGTGCTTTCATATTTTTTGATAAactatttagctagctagtatggTCTTCAGCGTAGCCGGGGACCAACGGAAGTCATGTGAATGACAAACGTCTTCTTCAGAAGCCAGTAACCTGCTTTTAGCCTCCAAGCGTTTATTGAAAGCTCCTAAAGCGTTTTCAAAGAACTAGACGCACAGTTTACTCACACTACGAGCTTTAGCCAGAGCTTGGCCCACGGCTCCCCCGAATCTGCACACGGACGCTGCCATCTTTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32663 lncRNA downstream 14445 15130003 ~ 15130260 (-) True G27699
TU32615 lncRNA downstream 79494 15064885 ~ 15065211 (-) True G27652
TU32551 lncRNA downstream 134044 15010325 ~ 15010661 (-) True G27600
TU32441 lncRNA downstream 260218 14884255 ~ 14884487 (-) True G27502
TU32421 lncRNA downstream 284459 14860005 ~ 14860246 (-) True G27484
TU32670 lncRNA upstream 4657 15150812 ~ 15151049 (-) True G27706
TU32777 lncRNA upstream 98160 15244315 ~ 15246353 (-) True G27801
TU32884 lncRNA upstream 236759 15382914 ~ 15384090 (-) True G27904
TU32925 lncRNA upstream 326186 15472341 ~ 15472547 (-) True G27932
TU32928 lncRNA upstream 331635 15477790 ~ 15478008 (-) True G27935
XM_026929254.2 mRNA downstream 105102 15033446 ~ 15039603 (-) True nprl2
XM_026929243.2 mRNA downstream 112143 15025127 ~ 15032562 (-) True zmynd10
XM_034313981.1 mRNA downstream 112204 15025127 ~ 15032501 (-) False zmynd10
XM_034313979.1 mRNA downstream 113060 15025127 ~ 15031645 (-) False zmynd10
XM_026929270.2 mRNA downstream 128435 15010827 ~ 15016270 (-) False LOC113535748
XM_026917581.2 mRNA upstream 130750 15276905 ~ 15278713 (-) True gpx1b
XM_034314036.1 mRNA upstream 315918 15462073 ~ 15495209 (-) True oxtr
XM_026919181.2 mRNA upstream 315918 15462073 ~ 15470172 (-) False oxtr
XM_026919171.2 mRNA upstream 315918 15462073 ~ 15470159 (-) False oxtr
XM_034314047.1 mRNA upstream 359489 15505644 ~ 15568428 (-) False rad18
XR_003403256.2 other downstream 268715 14872948 ~ 14875990 (-) False pxmp4
XR_003403257.2 other downstream 268715 14872949 ~ 14875990 (-) False pxmp4
trnae-cuc_5 other downstream 752354 14392280 ~ 14392351 (-) True trnae-cuc_5
TU31994 other downstream 1086260 14050401 ~ 14058445 (-) True G27107
XR_004579719.1 other downstream 1237516 13873714 ~ 13907189 (-) False lhfpl4a
TU32819 other upstream 151154 15297309 ~ 15299019 (-) True G27843
TU32916 other upstream 310480 15456635 ~ 15461001 (-) True G27925
TU32920 other upstream 315795 15461950 ~ 15469229 (-) False oxtr
TU34409 other upstream 2126800 17272955 ~ 17280173 (-) True G29158
XR_004577384.1 other upstream 2367557 17513712 ~ 17529315 (-) False si:dkey-44g17.6

Expression Profile