RNA id: TU32777


Basic Information

Item Value
RNA id TU32777
length 1921
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G27801
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 15244315 ~ 15246353 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atttcatatacattgataaaatatttcatatcaaCATATTGTAACTTCAACATGTAAACTGTGTAAAATTtctatttgtctttttattgaAATACCAGTTTCCATTGATTATAGtagtgttttttctctttcttctcaaACGAGTCAGAATGTGAAGGGAGGCAGACACTGCTGTGTGCATGAAACAATTCTCCAAAATATAGACAGAATACTcacttacaaataaaatggtttaaaaaaaaaaaaaaagccctcagACTTCAGTCACACAAACCAACCAAGTGAACCAAATGAAATGCATCCATACTACATAACCTAACAATCAATAAATGTTGGCCCTAAATGCTAAAATGAGCAAGATTTGGCGACCTCTTCCTTACAAATCCATACAGTCTTTAGCTGAATAACTAGTTGTATGTTCTTCTGTTCttggtaaacacacactgctctcctAGTTCAAACGTTTTgtcaaaaaagtttttatttacatCAGATCAATTAACAGTCTCCATGACATGACACTGCAGTTATCTGATCACACATACACTGGCACTGGTTTAAATCTTGGGTTGGAGAAACCAACATATGCTGCACATGTCTGAGTCACTGGGTTTGGCCATTTTCACAACATTTACCATCTGTGCTTTTAACCATTAGTAACTTGATTAAAAATGCAGCAGGTGGTGTATTGGCTGACTAGATGGAGAGAAATGGCTGTCCCACAAGAAAGACAGGGACACAGACATTcccaggatgaattctgagaGGGCTTTTGGAAAAAGAAGCACAAATGCCTTAGAGTGGCAGAGCACTGATTGTGTCCATATGataaaacaataattatataaaaagaaCTGAATAACAAACGGAAATCTGTCAGTCCAAGGTGCCTGTGGAgggcttttttgttgttgtttagaaGAGCAGAGCACCCATACTGCCGACTTCACTTTGTTCCTTTACAAAGATCTCAAAGTATTGGTAGATGATGGTGACGGCCAGCAAGATTCCTGTTCCTGAGCCAATGGCACCCAGGAAATCAGCCATGACAGAGAGGCCACCTATGCATAGTCCTCCAAAAGCTGCAGCTGTGGGGATGTACCTGAGTTCATGCACCATGgatgtgtctctgtgtcccCTCATCACCATCTGCTGTTCTTTAAGCTGTTTTGCAACCTAGGATAGAGAATTCCAGAGCTGTACATTATTACTCTATTCAACACAGAGCAATGTGGTATTGTACATCATAAATGACCTGAAAAATTCAAAGAAATACACTCACATCTTTGGCAGAAGATCCAGACACCTCAATCCATGTCTTTGAGAAGAAAGCACAGGAGCCCAGCATGAAGACGATATAGATGACAGCATGGACTGGATCATCTAAGACTGAGCCAAAGGACTCAGGAGGGGAGAGGTAATAACACAGACCGCCTACAGGGTAAGCACGAGCTGGCCCTCCAGTCGAGGTGTCCTGTTAACACATACATATACCATGTGAATCTCATGAATGtgcttcaaacacacacatttttgataAAATGATCTGTTTCATGCAGAAAACAAGCATGCACCTTCCTGTGGTGAAATGTTATCAAGACACTGCTAGGATAGTATCCTGATAAATTTTTACCACTTGTAATCAAACACGTCTCTGTTTAGCCAGATTGTATCTGATCGCTGTATCATGCAAATAACCCTATAACACTTAAACAACAATCTGTTTGTTCTGTGCATGATTTCGCATGGCATAATTTTTCCTTTAGTGCAAAGGAAGGTACCAATTTTTGACAGCTGATCTTAAAAGATGTCAGCTGTTTATGTTGTTTAATATTAAAGGGACCTTGGTTCCAGTGGTTTCACAGAACGATTCCGATTCAAGAATGAAGTGAATACATGTGAGAAAGAGTGTATAGCGCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32670 lncRNA downstream 93266 15150812 ~ 15151049 (-) True G27706
TU32669 lncRNA downstream 98160 15144705 ~ 15146155 (-) True G27705
TU32663 lncRNA downstream 114055 15130003 ~ 15130260 (-) True G27699
TU32615 lncRNA downstream 179104 15064885 ~ 15065211 (-) True G27652
TU32551 lncRNA downstream 233654 15010325 ~ 15010661 (-) True G27600
TU32884 lncRNA upstream 136561 15382914 ~ 15384090 (-) True G27904
TU32925 lncRNA upstream 225988 15472341 ~ 15472547 (-) True G27932
TU32928 lncRNA upstream 231437 15477790 ~ 15478008 (-) True G27935
TU32946 lncRNA upstream 257479 15503832 ~ 15504043 (-) True G27953
TU33196 lncRNA upstream 368672 15615025 ~ 15616748 (-) True G28173
XM_026929254.2 mRNA downstream 204712 15033446 ~ 15039603 (-) True nprl2
XM_026929243.2 mRNA downstream 211753 15025127 ~ 15032562 (-) True zmynd10
XM_034313981.1 mRNA downstream 211814 15025127 ~ 15032501 (-) False zmynd10
XM_034313979.1 mRNA downstream 212670 15025127 ~ 15031645 (-) False zmynd10
XM_026929270.2 mRNA downstream 228045 15010827 ~ 15016270 (-) False LOC113535748
XM_026917581.2 mRNA upstream 30552 15276905 ~ 15278713 (-) True gpx1b
XM_034314036.1 mRNA upstream 215720 15462073 ~ 15495209 (-) True oxtr
XM_026919181.2 mRNA upstream 215720 15462073 ~ 15470172 (-) False oxtr
XM_026919171.2 mRNA upstream 215720 15462073 ~ 15470159 (-) False oxtr
XM_034314047.1 mRNA upstream 259291 15505644 ~ 15568428 (-) False rad18
XR_003403256.2 other downstream 368325 14872948 ~ 14875990 (-) False pxmp4
XR_003403257.2 other downstream 368325 14872949 ~ 14875990 (-) False pxmp4
trnae-cuc_5 other downstream 851964 14392280 ~ 14392351 (-) True trnae-cuc_5
TU31994 other downstream 1185870 14050401 ~ 14058445 (-) True G27107
XR_004579719.1 other downstream 1337126 13873714 ~ 13907189 (-) False lhfpl4a
TU32819 other upstream 50956 15297309 ~ 15299019 (-) True G27843
TU32916 other upstream 210282 15456635 ~ 15461001 (-) True G27925
TU32920 other upstream 215597 15461950 ~ 15469229 (-) False oxtr
TU34409 other upstream 2026602 17272955 ~ 17280173 (-) True G29158
XR_004577384.1 other upstream 2267359 17513712 ~ 17529315 (-) False si:dkey-44g17.6

Expression Profile