RNA id: TU32884


Basic Information

Item Value
RNA id TU32884
length 1133
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G27904
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 15382914 ~ 15384090 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gactatattgttattttatttcaatccATATTTTGTCCATTGTTTTCTTGGAGGATGTTAACAACAAACACATCTGGCACATGCAGTAAGGATAGGGCTGTTTCTGTATGGAGCTATAACTAGTTATGATGAAGTTAACAGtcactgagcacacacacacacacacacacatacacacacatacactcaacaTTTACTTCCCTTTAACACCATTATAAAACAACTGACTCGACAGACATACATAAACTGATAATAAAAGCAGTTAGTTCATAATCGAATAATCAAATCTTATATTATTGTCTACATATCATTTGCtctaaaaatacatatttgttTGGTTACATAATTTGGAATTATTATTTAGAATTCCCTAGATGAGTTAtccattttgtttacatttttccaagATTATTTCAGTAGCACAAGCTTCGATTACACTGTAAGGAAATACATTATTTGTGCTGGGTGTCATTAGTTTATTGCCTCAAAGATGCTGAAACAGGTGATTCACTGTGATAAAAAAATCAGCAGGGATTCCCTTTTCAAATAACTGGCAGCTTTTATGAGATATTTTATGAGATACTGGACTAGAATCAGTGAGCTGAGGAAATacctttaagttttttttttttttttaggtttgatTACATAATGTTTATGTGACCTGCAGTAAGACTGCCACGTGTTTATAAAAACTGCCAAGATTcacccatttattattaaacctcTGATTACATATGTTAAGACTTTGCCTAGGTGACTAAGAAGCACCTCAAACGGAAacgaaaacaagaaaaagaagattCATTAACTACTTCAAACATGCACACGCAATCTATCCCTCATTACTCTCCCCTTCATTATCTCCTCTTTTCTCATTGTCCACCACATGATCCTCCTCAGCATTTTCCCtttccttctcctcttcctcaatGTCCATGTCCAGTTCTTCAAAGGATGAACCACTTCCTACAGACTCACTGGAGCCCTTGGCCCCCTGGTCTCCTTCCTCCGTCTGAGAATCTCTCTCATCCAGCGGTGGACTCTGCTGCACCACAGGCGAGGAGCTCTCCCCCATCTCGCTGCTTTCGGTGTCTGCCTCCATCACTGCTACGCCGCTCTCAGATGTGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32777 lncRNA downstream 136561 15244315 ~ 15246353 (-) True G27801
TU32670 lncRNA downstream 231865 15150812 ~ 15151049 (-) True G27706
TU32669 lncRNA downstream 236759 15144705 ~ 15146155 (-) True G27705
TU32663 lncRNA downstream 252654 15130003 ~ 15130260 (-) True G27699
TU32615 lncRNA downstream 317703 15064885 ~ 15065211 (-) True G27652
TU32925 lncRNA upstream 88251 15472341 ~ 15472547 (-) True G27932
TU32928 lncRNA upstream 93700 15477790 ~ 15478008 (-) True G27935
TU32946 lncRNA upstream 119742 15503832 ~ 15504043 (-) True G27953
TU33196 lncRNA upstream 230935 15615025 ~ 15616748 (-) True G28173
TU33208 lncRNA upstream 297480 15681570 ~ 15682044 (-) True G28182
XM_026917581.2 mRNA downstream 104201 15276905 ~ 15278713 (-) True gpx1b
XM_026929254.2 mRNA downstream 343311 15033446 ~ 15039603 (-) True nprl2
XM_026929243.2 mRNA downstream 350352 15025127 ~ 15032562 (-) True zmynd10
XM_034313981.1 mRNA downstream 350413 15025127 ~ 15032501 (-) False zmynd10
XM_034313979.1 mRNA downstream 351269 15025127 ~ 15031645 (-) False zmynd10
XM_034314036.1 mRNA upstream 77983 15462073 ~ 15495209 (-) True oxtr
XM_026919181.2 mRNA upstream 77983 15462073 ~ 15470172 (-) False oxtr
XM_026919171.2 mRNA upstream 77983 15462073 ~ 15470159 (-) False oxtr
XM_034314047.1 mRNA upstream 121554 15505644 ~ 15568428 (-) False rad18
XM_034314051.1 mRNA upstream 121554 15505644 ~ 15568428 (-) False rad18
TU32819 other downstream 83895 15297309 ~ 15299019 (-) True G27843
XR_003403256.2 other downstream 506924 14872948 ~ 14875990 (-) False pxmp4
XR_003403257.2 other downstream 506924 14872949 ~ 14875990 (-) False pxmp4
trnae-cuc_5 other downstream 990563 14392280 ~ 14392351 (-) True trnae-cuc_5
TU31994 other downstream 1324469 14050401 ~ 14058445 (-) True G27107
TU32916 other upstream 72545 15456635 ~ 15461001 (-) True G27925
TU32920 other upstream 77860 15461950 ~ 15469229 (-) False oxtr
TU34409 other upstream 1888865 17272955 ~ 17280173 (-) True G29158
XR_004577384.1 other upstream 2129622 17513712 ~ 17529315 (-) False si:dkey-44g17.6
TU34529 other upstream 2565067 17949157 ~ 17949718 (-) True G29263

Expression Profile