RNA id: TU32920


Basic Information

Item Value
RNA id TU32920
length 1757
RNA type TUCP
GC content 0.42
exon number 2
gene id oxtr
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 15461950 ~ 15495209 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGATTTTGTGCAGCCGTGGGGTGCCAAAGCCTACATCACTTGGATCAGCCTCACGGTCTACATCATTCCTGTGGCTATCTTGAGCATTTGTTACGGTCTCATAAGCTTTAAGATCTGGCAGAACTTTAAGCTGAAGACCAGGCGCGAGCAGCAGGTCGTCACTCTGAGTCCCACAGCCGCGCGAAACGGTGCGCTTTTGGCGCGCGTCAGCAGCGTCAGGCTCATCTCCAAGGCCAAGATCACCACGGTCAAAATGACGTTCGTCATCGTGCTGGCTTACATCGTGTGCTGGACTCCGTTCTTCTTCGTGCAGATGTGGTCGGCGTGGGATCCAGCTGCGCCCCGGGAGGCAATGCCCTTCATCATCTCCATGCTGCTGGCCAGTTTGAACAGCTGTTGTAACCCCTGGATCTACATGTGCTTTGCTGGACACCTGTTCCATGACCTGAAGCAGAACTTTCTGTGCTGCCCGGCACACTACCTGAAGTCCTCTCAGTGCCGCTGTGATCTGGAGCACAACTCGAGCCGCAAGAGCAACTCCTCCACTTATGTCATGAAGAGCACCAGCAGCCAGAGAAGCATTACCCAGACATCGTCCACATAGACACTGATACTTATCACACATGAGGACCAGGCATAGACCCATACAGAATGGAACAGTGATGTGCACAGATGGTTGTAAGCACATTGAGAGGAGCCTAATCAAACTCATTATCAGGACACTGGTGGAAGTTTTGGCTCCATCGCTGTGATTACTTCCtggactgcaaaaaaaaaaaaaaaaaaagactaccaTCAGAGGAAAGGGTGACTGTAATGTCATAGCAGATGGCATGTTACCATACATGCAGCCAAGAAAATGTCTGGCTCCAGATTAAAATCTGTTTGGCTTCCAGTAGAGAGgtcttttttaaaacctttgacTTGTTTTTTCTGATTCTAACTTAAATATGCTATTCAGTCAGTATTGCCACTCATCAACATTCCAttcattctcagaaaaaaaaagaaataaactatTTCATAGCTTTTCTTGTTACTTAAAGTCATATCTTGTGAAAACTGCATGTATTTTGTGGATTTACTAACATATTCTAAGATCAAGTCAGTAATGAGGACTAGACTCCATGTTTCAGTATCAGCTTGACAACAGTAACGCCTGTAGTAACAATTCAtggttttttcttcatttttttcaacagacatagttctgttttgtttgcttttttattatCAAGGAGCTCTTTAAGAGCTCAGCATTACTTTcccttttcttcctcatgaGTTATTCTTTGGTTTTATTCACCCAACAGTATCTTCTTGATCAGTTTCTATAGCCATtgctatttattttacagccaCATACTTTGTCATACTCATTTGCAGAGAATatgtaatcacacacttctgtgATGTTAACAGAAAGTGTGACCCCTGTGAGATAACTCTGTTTTATTGAAGTAAAATTCTGAATGTTTCCctaaaaaaagatatttgagGGCAGGTCAGCTAGTGTGCTTGTCCAACAACACAGAAATCTGGCATCATTTTTCTCACTTGCTGCATGCTGTAAGAAAGGAATGTCCTaatgtctcatttttttaaatccagcagTAAAATGATTGTTCAATGATTATACTTCTTTCAAAGTGTTTAATTCTATTCTTTACAGACACTTTTTTCTCAGTCAAAAGGCTACTGAATTTAACTTCTGAAAAGCAGTCATATTTACTATTAATATAAGTCAGAATATGGAg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32884 lncRNA downstream 77860 15382914 ~ 15384090 (-) True G27904
TU32777 lncRNA downstream 215597 15244315 ~ 15246353 (-) True G27801
TU32670 lncRNA downstream 310901 15150812 ~ 15151049 (-) True G27706
TU32669 lncRNA downstream 315795 15144705 ~ 15146155 (-) True G27705
TU32663 lncRNA downstream 331690 15130003 ~ 15130260 (-) True G27699
TU32925 lncRNA upstream 3112 15472341 ~ 15472547 (-) True G27932
TU32928 lncRNA upstream 8561 15477790 ~ 15478008 (-) True G27935
TU32946 lncRNA upstream 34603 15503832 ~ 15504043 (-) True G27953
TU33196 lncRNA upstream 145796 15615025 ~ 15616748 (-) True G28173
TU33208 lncRNA upstream 212341 15681570 ~ 15682044 (-) True G28182
XM_026917581.2 mRNA downstream 183237 15276905 ~ 15278713 (-) True gpx1b
XM_026929254.2 mRNA downstream 422347 15033446 ~ 15039603 (-) True nprl2
XM_026929243.2 mRNA downstream 429388 15025127 ~ 15032562 (-) True zmynd10
XM_034314047.1 mRNA upstream 36415 15505644 ~ 15568428 (-) False rad18
XM_034314051.1 mRNA upstream 36415 15505644 ~ 15568428 (-) False rad18
XM_034314053.1 mRNA upstream 42637 15511866 ~ 15568428 (-) True rad18
XM_034314042.1 mRNA upstream 56331 15525560 ~ 15568428 (-) False rad18
XM_026919148.2 mRNA upstream 149122 15618351 ~ 15727114 (-) False srgap3
TU32916 other downstream 949 15456635 ~ 15461001 (-) True G27925
TU32819 other downstream 162931 15297309 ~ 15299019 (-) True G27843
XR_003403256.2 other downstream 585960 14872948 ~ 14875990 (-) False pxmp4
XR_003403257.2 other downstream 585960 14872949 ~ 14875990 (-) False pxmp4
trnae-cuc_5 other downstream 1069599 14392280 ~ 14392351 (-) True trnae-cuc_5
TU34409 other upstream 1803726 17272955 ~ 17280173 (-) True G29158
XR_004577384.1 other upstream 2044483 17513712 ~ 17529315 (-) False si:dkey-44g17.6
TU34529 other upstream 2479928 17949157 ~ 17949718 (-) True G29263
TU34546 other upstream 2601758 18070987 ~ 18072909 (-) True G29279
trnae-cuc_6 other upstream 3107995 18577224 ~ 18577295 (-) True trnae-cuc_6

Expression Profile