RNA id: TU32973


Basic Information

Item Value
RNA id TU32973
length 1691
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G27979
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 15615024 ~ 15616714 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttgtttttattttggatttgAGAATTCTTCACATCCAAACAGTGGCATGGTGTACAGTTAACCTACACAGGGAGGAATCAACCATCCAAACACTcatgaacaaacagcatcattAGACAGAAGGGTTAATAGGAGGGCGAAAAACAGTATGTCAATATTCACAACTCACTAATACAGACAGACGCAAGTTTGGCTTTATGAATGCTGTGTCTAGAGAAGGAGGAAGTCTGTTACCTTAGCATACATACAATCAAGCATACATACAATAAACACCCATTAGAGCATACGTTCTcaaactgacagaaaaaaaaaaaaaaactttcagaatTCATGGTCCACATACAGTCCGTAATGGACAGGAGTGCACCAAGTGCCTCAGTAATCGTGCAAGTACCATAGAAGATTTGACTAGGCCTTAAATACTGCAATGCATTAGCTAAAAGGATAGGTAGAAGGATTATACGAAGAGCAGAAAGTCAAAGCTTTTGTGCAGCACAGTCTCAGGTCATACGGAGAGGAGACAGGAATGGTAGGAATTATATAACACACAAGAAACAGATGGTGATTATTAAAACCTCAGTATGGTGTGATATGGACTGCAGCCTTCATACATCTGTCATTAATCTCTAGCAACAAGTTCAACAGCTCCTACTCATGAGCACTTTCAAAGAATCCAATGCAGGGCAACAAGCCATCTGCTGATAGCTGACCAGACGTTCCTGATTATTATCAATTTATAATACGATAAACTCCAAGAACCTTGATCATAATCAAAACAGTTTATCAAAGTCAACAAAAATGAATGCGCCACAAAATTGTTAAAAGgtaagtaaaaataaagtttgacaCATAACATAGATAATACAGTCATTTACTTTATGGTAATTTGGAATTGTGCTGTTTGTGCTCATATCTGGAGTAGCTGTTAGTGGTCAATGTTTCAAATGAGATCAAGAACAACCAAATTAGTATTACTGATTTAACATCATGACTAATGCCAGGGTGGAGGGCAGTGTGTCCATATACATAGATGATACATTGTGTGATTCACTGTAATGATGCACAACTGTTTAGTGCCAATTTTAATTTAACGGTGTACTCTACACAGACAAATTGCTTTACTCCATATGTGACAGCTCTCTGATTAAACACATAAATCCAGCATTTTCCAGTAGAGGGAGATGAAGAGCACAGAGGAAACTCTTTCCAGCCTCCAGAGGGCAGTGCAGGACCTGCTGCAGGACCAAAGACAGTCTCCATGCTTTCCAAACAAAGACACCAGAGGAATCACCAGTCAGAGTGGAAGTGGATCTAATTAATGACTACTCATCAGAGCACCACAATATCACATAATAAAAGTCACATAAATAAAAGTACTAAACCATACCTTTCCTCACTGAAGTGTGACCCTCAAGACTACATCATTTGTacctgtattattattattattattattattattattattatccagaggctatccagggaacactgggtgtgaagcatgaatgggatgccagtccttCACAGGgcacattgcacacacacattcacacacttattcacacctagaggcaatttagtgtagccagtccacctacatgCAAGATTTTTCATGATTGTTCAAACCTTTGTGGACACGGGACAatcatgcaaaactccacacagacagtaggCTGTGAGATGGCAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32743 lncRNA upstream 125260 15489536 ~ 15489764 (+) True G27769
TU32738 lncRNA upstream 143268 15471532 ~ 15471756 (+) True G27764
TU32702 lncRNA upstream 336308 15276640 ~ 15278716 (+) True G27733
TU32642 lncRNA upstream 507850 15106957 ~ 15107174 (+) True G27679
XR_004577376.1 lncRNA upstream 734600 14876678 ~ 14880424 (+) True LOC117596203
TU33046 lncRNA downstream 157662 15774376 ~ 15775849 (+) True G28040
TU33047 lncRNA downstream 160184 15776898 ~ 15778600 (+) True G28041
TU33049 lncRNA downstream 171937 15788651 ~ 15790444 (+) False LOC113534559
XR_004579681.1 lncRNA downstream 217764 15834478 ~ 15837386 (+) True LOC117599223
XR_003403691.1 lncRNA downstream 279714 15896428 ~ 15908054 (+) True LOC113536643
XM_026924038.2 mRNA upstream 154022 15456646 ~ 15461002 (+) True cav3
XM_026919013.2 mRNA upstream 161897 15451434 ~ 15453127 (+) True LOC113529636
XM_026923867.2 mRNA upstream 168854 15441220 ~ 15446170 (+) True gpr61l
XM_026928781.2 mRNA upstream 174696 15432270 ~ 15440328 (+) False parp3
XM_026936877.2 mRNA downstream 118130 15734844 ~ 15749493 (+) True hemk1
XM_026927452.2 mRNA downstream 171912 15788626 ~ 15790439 (+) True LOC113534559
XM_026923932.2 mRNA downstream 270459 15887173 ~ 15891814 (+) True LOC113532530
XM_026915455.2 mRNA downstream 376305 15993019 ~ 16010839 (+) True LOC113527532
XM_026915463.2 mRNA downstream 376306 15993020 ~ 16010839 (+) False LOC113527532
XR_004580083.1 other upstream 320670 15278827 ~ 15294354 (+) False fancd2
trnaf-gaa_15 other upstream 423368 15191584 ~ 15191656 (+) True trnaf-gaa_15
XR_004577012.1 other upstream 2113728 13498298 ~ 13501296 (+) False tshba
XR_004577010.1 other upstream 2115659 13496082 ~ 13499365 (+) False tshba
TU33403 other downstream 564604 16181318 ~ 16182303 (+) False mustn1a
TU34871 other downstream 3158056 18774770 ~ 18826920 (+) False G29569
trnai-aau other downstream 3200688 18817402 ~ 18817475 (+) True trnai-aau
TU35395 other downstream 3917727 19534441 ~ 19537014 (+) False smx5
XR_003403752.1 other downstream 4493416 20110130 ~ 20110225 (+) True LOC113537321

Expression Profile