RNA id: TU33047


Basic Information

Item Value
RNA id TU33047
length 1483
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G28041
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 15776898 ~ 15778600 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cctttaatatattttattaatacaaaCAGAAATTCCTGATTTTGTGCATATCCCCCTTCAGAAGGAATCtgaggtcagagcacagggtcagtgTGAAACATCTCTGGAGCAGTTCAGATTTAAGGGTCTTGAGATTGTAACTTCTGGTCACCATTTATTGAAAATTTATACTTTGAACAAATTCCCTCACTCCAACAACCATAACTATTTGTGTTCTTGTTCTTTATAGCTAGCTGTAAGGACAGTGCATGAGTGATGATAAAGGAGCCAGCATAGACTGCCGCAGGccgggttcaattcctggccagggaaccaaccccagcacaagacagtgcactcccagtgctgggccccagcctggataaaattggggagggttgtgtcaggaaaggaatccggtgtaaaaactgcgccaaatcaaatatgcggatgatgatctgctgtggcaagccctaacaggagcagccagaagaacaacaacaataataactcTTGGTTTTGAAGGTCAAGTCAATAAGAGAAGGCCAGCAGGACAGGGACATTATCATCTCCATCATGGGTTCAAACTCAGGAATTCACACAACACAATTTTGATTCTTAAGGCAATGATTCGATATTCAACAAACCACCTAATCTACTATGATTCGATTTAGTAGCCTGACtgaactttgttcagaatccaGGGTAGGCCCACCGTTAATTCGCAAATTATGATGTAGAGGAGGACTATTTTAACTATCAGTTATGAGCAAATCACTTTGCTGGCCTATTTAAAcattagaatttatttatttatttatttatttatacatacacataccaGTTGTCTGTCTTTTTGATAATCAATTTAGACTCGATTATAACTGACTTACGATTTTTGCCTTGCCTAAATTCAATCATTACCTTGATCCAAATCATCTGATGGTGTCACTCCTAGTTAATAATAGTCATTTCTCTTGATCAAGACTTGGTAAAGAAAAGTGACACTAATCCTTATAACTCATTTATTCAATTAATTTTTAGCTGTTGCTGATTCTGGTATAGAATATACTTTTCAAAACCAATATTCTGATCATTTTCACCATTAAACtagataaatatttattgagCACATGTCCCACAGACAGTTCTTCAGACTGCATGAACTACATATTCAGGTGGCACTCATTTCTGACATAAATCAAAATGCTAAACTAACTCAAGACCTTTTCTGAGGGCAAACAAGAGCATCATAAATGAACGCACATCACAGAAAAACCACTTTACAAAAGAACATGATTTAATGATACaggtataaaatgaaaaagaaattagaACATGGCCTCATGGTCAGCCTATTTACAGTCCACAAAAAGCAGTCCCAGAGATCCAGAGGCAATGTAAACGCTGCCATCTGCTGGATCACAACAACCCGTCAAATTCAAATTCTTGTTTAATGCACAGCTTCATCAGTCATCGATTGTTGGTAGCCAGAATGCCTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33046 lncRNA upstream 1049 15774376 ~ 15775849 (+) True G28040
TU32973 lncRNA upstream 160184 15615024 ~ 15616714 (+) True G27979
TU32743 lncRNA upstream 287134 15489536 ~ 15489764 (+) True G27769
TU32738 lncRNA upstream 305142 15471532 ~ 15471756 (+) True G27764
TU32702 lncRNA upstream 498182 15276640 ~ 15278716 (+) True G27733
TU33049 lncRNA downstream 10051 15788651 ~ 15790444 (+) False LOC113534559
XR_004579681.1 lncRNA downstream 55878 15834478 ~ 15837386 (+) True LOC117599223
XR_003403691.1 lncRNA downstream 117828 15896428 ~ 15908054 (+) True LOC113536643
XR_004579697.1 lncRNA downstream 164762 15943362 ~ 15960870 (+) True LOC117599231
TU33146 lncRNA downstream 234747 16013347 ~ 16014109 (+) True G28132
XM_026936877.2 mRNA upstream 27405 15734844 ~ 15749493 (+) True hemk1
XM_026924038.2 mRNA upstream 315896 15456646 ~ 15461002 (+) True cav3
XM_026919013.2 mRNA upstream 323771 15451434 ~ 15453127 (+) True LOC113529636
XM_026923867.2 mRNA upstream 330728 15441220 ~ 15446170 (+) True gpr61l
XM_034300687.1 mRNA upstream 336570 15432894 ~ 15440328 (+) True parp3
XM_026927452.2 mRNA downstream 10026 15788626 ~ 15790439 (+) True LOC113534559
XM_026923932.2 mRNA downstream 108573 15887173 ~ 15891814 (+) True LOC113532530
XM_026915455.2 mRNA downstream 214419 15993019 ~ 16010839 (+) True LOC113527532
XM_026915463.2 mRNA downstream 214420 15993020 ~ 16010839 (+) False LOC113527532
XM_034300857.1 mRNA downstream 256853 16035453 ~ 16048798 (+) False rab44
XR_004580083.1 other upstream 482544 15278827 ~ 15294354 (+) False fancd2
trnaf-gaa_15 other upstream 585242 15191584 ~ 15191656 (+) True trnaf-gaa_15
XR_004577012.1 other upstream 2275602 13498298 ~ 13501296 (+) False tshba
XR_004577010.1 other upstream 2277533 13496082 ~ 13499365 (+) False tshba
TU33403 other downstream 402718 16181318 ~ 16182303 (+) False mustn1a
TU34871 other downstream 2996170 18774770 ~ 18826920 (+) False G29569
trnai-aau other downstream 3038802 18817402 ~ 18817475 (+) True trnai-aau
TU35395 other downstream 3755841 19534441 ~ 19537014 (+) False smx5
XR_003403752.1 other downstream 4331530 20110130 ~ 20110225 (+) True LOC113537321

Expression Profile