Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU33049 |
| length | 679 |
| lncRNA type | sense_over |
| GC content | 0.38 |
| exon number | 3 |
| gene id | LOC113534559 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047596.1 |
| NCBI id | CM018542.1 |
| chromosome length | 35203048 |
| location | 15788626 ~ 15790444 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU33047 | lncRNA | upstream | 10051 | 15776898 ~ 15778600 (+) | True | G28041 |
| TU33046 | lncRNA | upstream | 12802 | 15774376 ~ 15775849 (+) | True | G28040 |
| TU32973 | lncRNA | upstream | 171937 | 15615024 ~ 15616714 (+) | True | G27979 |
| TU32743 | lncRNA | upstream | 298887 | 15489536 ~ 15489764 (+) | True | G27769 |
| TU32738 | lncRNA | upstream | 316895 | 15471532 ~ 15471756 (+) | True | G27764 |
| XR_004579681.1 | lncRNA | downstream | 44034 | 15834478 ~ 15837386 (+) | True | LOC117599223 |
| XR_003403691.1 | lncRNA | downstream | 105984 | 15896428 ~ 15908054 (+) | True | LOC113536643 |
| XR_004579697.1 | lncRNA | downstream | 152918 | 15943362 ~ 15960870 (+) | True | LOC117599231 |
| TU33146 | lncRNA | downstream | 222903 | 16013347 ~ 16014109 (+) | True | G28132 |
| XR_004577052.1 | lncRNA | downstream | 238690 | 16029134 ~ 16032135 (+) | True | LOC113533806 |
| XM_026936877.2 | mRNA | upstream | 39158 | 15734844 ~ 15749493 (+) | True | hemk1 |
| XM_026924038.2 | mRNA | upstream | 327649 | 15456646 ~ 15461002 (+) | True | cav3 |
| XM_026919013.2 | mRNA | upstream | 335524 | 15451434 ~ 15453127 (+) | True | LOC113529636 |
| XM_026923867.2 | mRNA | upstream | 342481 | 15441220 ~ 15446170 (+) | True | gpr61l |
| XM_034300687.1 | mRNA | upstream | 348323 | 15432894 ~ 15440328 (+) | True | parp3 |
| XM_026923932.2 | mRNA | downstream | 96729 | 15887173 ~ 15891814 (+) | True | LOC113532530 |
| XM_026915455.2 | mRNA | downstream | 202575 | 15993019 ~ 16010839 (+) | True | LOC113527532 |
| XM_026915463.2 | mRNA | downstream | 202576 | 15993020 ~ 16010839 (+) | False | LOC113527532 |
| XM_034300857.1 | mRNA | downstream | 245009 | 16035453 ~ 16048798 (+) | False | rab44 |
| XM_034300866.1 | mRNA | downstream | 245009 | 16035453 ~ 16048798 (+) | False | rab44 |
| XR_004580083.1 | other | upstream | 494297 | 15278827 ~ 15294354 (+) | False | fancd2 |
| trnaf-gaa_15 | other | upstream | 596995 | 15191584 ~ 15191656 (+) | True | trnaf-gaa_15 |
| XR_004577012.1 | other | upstream | 2287355 | 13498298 ~ 13501296 (+) | False | tshba |
| XR_004577010.1 | other | upstream | 2289286 | 13496082 ~ 13499365 (+) | False | tshba |
| TU33403 | other | downstream | 390874 | 16181318 ~ 16182303 (+) | False | mustn1a |
| TU34871 | other | downstream | 2984326 | 18774770 ~ 18826920 (+) | False | G29569 |
| trnai-aau | other | downstream | 3026958 | 18817402 ~ 18817475 (+) | True | trnai-aau |
| TU35395 | other | downstream | 3743997 | 19534441 ~ 19537014 (+) | False | smx5 |
| XR_003403752.1 | other | downstream | 4319686 | 20110130 ~ 20110225 (+) | True | LOC113537321 |
