Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU33146 |
| length | 647 |
| lncRNA type | inter_gene |
| GC content | 0.46 |
| exon number | 2 |
| gene id | G28132 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047596.1 |
| NCBI id | CM018542.1 |
| chromosome length | 35203048 |
| location | 16013347 ~ 16014109 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004579697.1 | lncRNA | upstream | 52477 | 15943362 ~ 15960870 (+) | True | LOC117599231 |
| XR_003403691.1 | lncRNA | upstream | 105293 | 15896428 ~ 15908054 (+) | True | LOC113536643 |
| XR_004579681.1 | lncRNA | upstream | 175961 | 15834478 ~ 15837386 (+) | True | LOC117599223 |
| TU33049 | lncRNA | upstream | 222903 | 15788651 ~ 15790444 (+) | False | LOC113534559 |
| TU33047 | lncRNA | upstream | 234747 | 15776898 ~ 15778600 (+) | True | G28041 |
| XR_004577052.1 | lncRNA | downstream | 15025 | 16029134 ~ 16032135 (+) | True | LOC113533806 |
| XR_003403456.2 | lncRNA | downstream | 15025 | 16029134 ~ 16032135 (+) | False | LOC113533806 |
| TU33168 | lncRNA | downstream | 59113 | 16073222 ~ 16076550 (+) | True | G28150 |
| TU33170 | lncRNA | downstream | 69180 | 16083289 ~ 16084968 (+) | False | slc2a11a |
| TU33176 | lncRNA | downstream | 91934 | 16106043 ~ 16106272 (+) | True | G28156 |
| XM_026915455.2 | mRNA | upstream | 2508 | 15993019 ~ 16010839 (+) | True | LOC113527532 |
| XM_026915463.2 | mRNA | upstream | 2508 | 15993020 ~ 16010839 (+) | False | LOC113527532 |
| XM_026923932.2 | mRNA | upstream | 121533 | 15887173 ~ 15891814 (+) | True | LOC113532530 |
| XM_026927452.2 | mRNA | upstream | 222908 | 15788626 ~ 15790439 (+) | True | LOC113534559 |
| XM_026936877.2 | mRNA | upstream | 263854 | 15734844 ~ 15749493 (+) | True | hemk1 |
| XM_034300857.1 | mRNA | downstream | 21344 | 16035453 ~ 16048798 (+) | False | rab44 |
| XM_034300866.1 | mRNA | downstream | 21344 | 16035453 ~ 16048798 (+) | False | rab44 |
| XM_034300849.1 | mRNA | downstream | 21345 | 16035454 ~ 16048798 (+) | True | rab44 |
| XM_034300871.1 | mRNA | downstream | 21345 | 16035454 ~ 16048798 (+) | False | rab44 |
| XM_026934989.2 | mRNA | downstream | 49015 | 16063124 ~ 16066779 (+) | True | trub2 |
| XR_004580083.1 | other | upstream | 718993 | 15278827 ~ 15294354 (+) | False | fancd2 |
| trnaf-gaa_15 | other | upstream | 821691 | 15191584 ~ 15191656 (+) | True | trnaf-gaa_15 |
| XR_004577012.1 | other | upstream | 2512051 | 13498298 ~ 13501296 (+) | False | tshba |
| XR_004577010.1 | other | upstream | 2513982 | 13496082 ~ 13499365 (+) | False | tshba |
| TU33403 | other | downstream | 167209 | 16181318 ~ 16182303 (+) | False | mustn1a |
| TU34871 | other | downstream | 2760661 | 18774770 ~ 18826920 (+) | False | G29569 |
| trnai-aau | other | downstream | 2803293 | 18817402 ~ 18817475 (+) | True | trnai-aau |
| TU35395 | other | downstream | 3520332 | 19534441 ~ 19537014 (+) | False | smx5 |
| XR_003403752.1 | other | downstream | 4096021 | 20110130 ~ 20110225 (+) | True | LOC113537321 |
