RNA id: TU33168


Basic Information

Item Value
RNA id TU33168
length 3329
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G28150
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 16073222 ~ 16076550 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgagtgtctaataacaacaaaaatgctACCTCTGGCTAAATGTTCTTTGCTTGCGTGTGTCTATGTGACTTCCATCTATACTATACACTGTATGTAGGTAATAAGTGGACAGAGGTTAAAAAAGTGAACATGCTGGAAAGGGAACAGAGCAAAGCAagaaaaagctgaaaataaTTCTCATTCATGTAAAGGTCTAAAATAGGGATATGAGACTTCTACTCCTGGAAGGCCACAGCACTGCATTATACCTCATTGAACACAGTAGATGTactataaagaaaagaaaaaactcagtAGGGCTGTGGACTGCCAAGACCAGCGTTTGATGCTTTTGTACTAAAAGAACctaaaaactgaaaagaaaaaaaaggttcaaatAATTTAACTtcctgcaaaaataataataataataataataataataataaacaccaagTCAGCAAGTctttctgcattttaacatttttaggtGAAAAAGGTATACATAAAGGAACATAGTCAGGAACATAGAAATATGATGCAGCTGATTATTGAACCAACAACCATGTAATTAATGACGATCACAAGCAACAACTATCCAGGAACACAGAGCTATTTATAATCCTGTTGTATCTAGGATCAAACAAATTGTGCATGATGCAATTTTATAGCGAGATGTTATAGCACTGtgtaatttacagtaaaataaataaacatgtattatAATGACAAAGTAGTTGACAGCTCTATACGTGTTTTTACACAGAaaggacaaaaaacaaaatgttttaagacTGTAAAGTCTAGATGGTATATGAACATAACATTGCGAGtacagttttccttttttttttttttttaaatactggatAACAAAAACAATGTGTCAAAGTAAACcaataaacagatttacatGATCAAATAGATCAAATAGACAGAGCAGAAGAGATGAGATCTCAATCATCTCTCACAATTAGTATTCATTTGCTTGCaaccacttttttcccctttaatatCCAATTAATTTCCTGTATTTGCTCATGTTAAAtataacatcttttttttttttctttactttcagTTTGGATTAGAATTTTTTCTCCAGTAAATAATCAGGTTTTTTTAAGTGACATCATTTATATAAAGTGCTCAATGCCAGCAACACTCTCTCCCTCGGTCCTTTGGATGAAGTCTTATTCAATCAATTTTCCCTAAAACTGTGAACTATTACTACAGTAATGTAACTCGTGTTAATGATTTCTAATTTTGGAACATCTTGTGCATAAAGCAGGACTGTTTGCATCTACTGTGTCATTGGGCAGTTTTAGGGTTCAGCAAAAGCCGATGACTGAATAAAACAGTATCAAGGTTTCACCAGTATCTGGATGCACCTAGTCACCATACATTTACATAAGAACAATGACAAAAGGCTTGAGGGTCAATAAGACAACATACACAATGTTAAACAAGGTTTAAAACTTTCTAAAACTCAGAGTCTAAAATTTTCGGAATAGatttgcagtaaacagtaacaagCTTTAAATAAGAAACAAAGCCGTCACGGCTGTCTATATGTGTATACATAGTtgagtgtgagcatgtgtgtggatTATATGTAGAAGTGAACATGTACATAGTGCTTTGTGAAGTGAATTTAGTGGATTTATCACAATTATATCTACAAACACTCTTTAATCAAAATCAGGCCCCACTAAGGACTGGGCCTGTTTAGCACGTTTCAGATTTTGTTTTCCAGAAAAGAGCCAGTGTCTATTTTACTATTGCCATCAGGGTAAGAGTGCGGTGCaacagtgtatagtgcatatGTGTAAACACACTTGTGCACACCCAAACTTTCAATCATTAATGCAATTTCTGCCAAAACCATACATGTTGTGAGTCTGATTTTAGAAGTTATACAATATTGTCAAAAACCTTGTAACAATGATCTTTCCACTATCAAGAACTGAAACAGGAGAAAGCTCAACTCAAGGGTATGTGAGgcaagtatgcatacttatgtTATTAAATGGAATCTGTGAATAAGAATATCTcaagtgcaataataataaagaacatAAGCATAAAATACCCTCTGGTTTCCAAGACCCAATTGTTTTCATCAGAAGCCTGCCAATGActgttaatttgtaaatatatcattattgaatatattaatatatttgaaaaatactCTGAAAACCTTGTTTCTTCGTCCATTATTATCATCCAAGATTATCATCATTTAAGATCCAAGATATCTAAGATTATTCTTCCATTCTTAGAACAATTAACTGCGTGTGACACTCCTGAAtaactaaaacatttaaaactgtaTCTCCATTACACCACACaccaaaagtttggacacatgTAACTGGTCTTGATAATCTTAAAAGATATCTAAAGGCATATGATTGAAATTTGtttcaaatgcaaaaataaatagttttcatttaaaacttaGAAACTACAGCCAATAACTGCTCAGCATACATGGGAACTCTTGGAAATTAACCCAACTCTTCACAGATTTCTCATGAAGCTTGTTAAtaactattttctttttttttttttttttttttgtttagcaaTTTTTGTTCCCTGTAAAATTCaacatttttggattttttgttattttagtcctaatgtggaaaattaaacaaaatcttTCTACAAGTAGGTGTATCCAAACTTTTGACAAGTACTATCTCTCTTTTGGTGTCACATGCCATAAACATTTTGTTAGTTTTTCCAAGCTTTTTTGTGATTTGAAAAATCAAAATATTCCTCTTATCATCCTCTTATCATGCTGTCCACTTCTCATGTCAAAATGAACATAGTTCTCTGTGTCTCGAGAATGTCCAAGCACCCTAAGCACAttaattcatgattttttttcagagttCTGAATCTCATTCTTACTTTTCATATCCAGCTGAGCAGGCTTTAAGCACTAGTCCGTTACTCCTTCACTGCAGAGCTTTTCCTCACAGGATCTTAAGTCTGACTGGATCTTCACTCCTGTAATCTGTTCCAACACAATAGTATGAAAGTCCAGGAGATCAATATCTGTGTTGGGAAGTTACCGTAAATTGGAAATAAACCGTCTtccatcattttagttttacattccacaaaaaaataaaaactgaaaggCTAAGTTTACTTCCACTGAGTATGTAAGTTCTGAATTCCACATCTGGTTTGGTTCTCAGCATGCTGACATGAGTCAGTAGCTTAATCCAGGGATAATCCTTGGGATTTCAGGTGGCAGAATGGAGAACATAGGTACACCAACAGCACTACACTGGACtcatttcaaactgctgcagaaaaaatacagaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577052.1 lncRNA upstream 41087 16029134 ~ 16032135 (+) True LOC113533806
XR_003403456.2 lncRNA upstream 41087 16029134 ~ 16032135 (+) False LOC113533806
TU33146 lncRNA upstream 59113 16013347 ~ 16014109 (+) True G28132
XR_004579697.1 lncRNA upstream 112352 15943362 ~ 15960870 (+) True LOC117599231
XR_003403691.1 lncRNA upstream 165168 15896428 ~ 15908054 (+) True LOC113536643
TU33170 lncRNA downstream 6739 16083289 ~ 16084968 (+) False slc2a11a
TU33176 lncRNA downstream 29493 16106043 ~ 16106272 (+) True G28156
TU33180 lncRNA downstream 45427 16121977 ~ 16122332 (+) True G28160
TU33182 lncRNA downstream 46346 16122896 ~ 16123140 (+) True G28162
TU33361 lncRNA downstream 78436 16154986 ~ 16155244 (+) True G28287
XM_026921783.2 mRNA upstream 2182 16068404 ~ 16071040 (+) True hdhd3
XM_034310846.1 mRNA upstream 2182 16069528 ~ 16071040 (+) False hdhd3
XM_026934989.2 mRNA upstream 6443 16063124 ~ 16066779 (+) True trub2
XM_034300857.1 mRNA upstream 24424 16035453 ~ 16048798 (+) False rab44
XM_034300866.1 mRNA upstream 24424 16035453 ~ 16048798 (+) False rab44
XM_026929453.2 mRNA downstream 7141 16083691 ~ 16103248 (+) False slc2a11a
XM_026929375.2 mRNA downstream 7142 16083692 ~ 16103248 (+) True slc2a11a
XM_034300566.1 mRNA downstream 7775 16084325 ~ 16103248 (+) False slc2a11a
XM_026918596.2 mRNA downstream 62933 16139483 ~ 16156080 (+) False sfi1
XM_026918673.2 mRNA downstream 62933 16139483 ~ 16156080 (+) False sfi1
XR_004580083.1 other upstream 778868 15278827 ~ 15294354 (+) False fancd2
trnaf-gaa_15 other upstream 881566 15191584 ~ 15191656 (+) True trnaf-gaa_15
XR_004577012.1 other upstream 2571926 13498298 ~ 13501296 (+) False tshba
XR_004577010.1 other upstream 2573857 13496082 ~ 13499365 (+) False tshba
TU33403 other downstream 104768 16181318 ~ 16182303 (+) False mustn1a
TU34871 other downstream 2698220 18774770 ~ 18826920 (+) False G29569
trnai-aau other downstream 2740852 18817402 ~ 18817475 (+) True trnai-aau
TU35395 other downstream 3457891 19534441 ~ 19537014 (+) False smx5
XR_003403752.1 other downstream 4033580 20110130 ~ 20110225 (+) True LOC113537321

Expression Profile