RNA id: XM_034300566.1


Basic Information

Item Value
RNA id XM_034300566.1
length 2296
RNA type mRNA
GC content 0.44
exon number 15
gene id slc2a11a
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 16083289 ~ 16103248 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCGCTAATGTGCAACACTGGGGCTGGAATGGGATCTCCCTATGCACACCTTCTTTCTTCCCCTTGGCTTCCACATCTCCTGCCATCCAATGACTAGAGGGCCTGTGTCTACATACTGCCAGAATGTTCAAGTGGAAGAGCTGACAAGTCGGACTAGTTGGACGATTTTTGACCCTGACTCTGATTTTAGACTCTATCTAATCTGAAGCAAGCGCCACAATATTTATGTCTATGCTTCTTATGTATTTCACGAAGTAAGAATTTCAACTGAACACCTACAGTATTTGACCACCAGCACTGGCACTTGTGAATTCATCGCCTGTattctgtgtgcgctgcctcactttttttttgctatacctGCGATTAAGTAGCAACAGCTAGCATCATGACTTCACACGGGCAGAAAGACGCCACGTCTGAGCAACAAAAGGGCAATGCTCGCACTCTGACCTTAATGGTAACTTCTGCTGCAGTTGGGGGAACATTACAATACGGATACAACCTTACCATTATGAATGCACCCACTGTTTATATTCAGAACTTTGTTAATGAGACGTTTCAGAAGCGCTGGGAGATACAGTTAGAGGAGTACCAGGTTACATTGATCTGGACACTCATAGTGTCTGTCTTCTCATTGGGTGGTCTTACAGGGTCTCTGTTGGCCGGGCCCATGTCCATCCACTTTGGGAGGAAGAAAACTATGCTGCTGAACAATATTTTTCTAATGTCCAGTGCACTGCTGGCTGTGACAAGCCGGCATGCTCAGTCTTTTGAGATGATCATCATCTCCAGATATCTGGTTGGCATCAATGTGGGGGTCAGTATGAATGTGCAGCCAATGTATTTTGGTGAAAGTGCACCAAAACACTTACGTGGTGCTGTGGCCCTGTCCTCTTCTGTCTTCACCTCTTTTGGGTTGGTGCTAGGACAAGTGGTAGGTTTGAGggagGTGCTGGGTTGTGAATCATGTTGGCAATACTTGTTAGCGAGTAATGCTGTGCCAGGCTTCATTCAGCTTCTCACACTACCCTGGTTCCCAGAGAGCCCGCGGTACCTTCTCATTGATCGTGGGGACAAGGACGCCTGCTTAAAGGcaCTGCGGCGGTTGCGAGGCTGTGAGGTGCAGAAAGAGGAGTTGGATGAGATGCTGCAAGAGCAGGCTGAATCTCAGGGCAGGCGAGCTCAGCAGCCCTGGGAGCTCTTCAGTGACCGTACTGTTCGTTGGCAACTCATCTCAGTCGCCGTCATAAGCAGCGCCATGCAGTTGTGCGGTAATGACTCAATTTACTTCTATGCTTCTTACATATTTCAAGAGGCGGGAATATCAGTTGAATACACCCAGTATGTGACCATTGGCACTGGCACATGTGAATTCACCGCCTGTattctgtgtAACCTGTTGATAGAACGGAAGGGTAGAAGGCTGCTTTTAATGGGAGGTTATGTGCTCATGACTGGCTGGGCTATAGTTTTCACCGTGGCTCTTTCATATCAGCATGTAGTACACTGGATGCCTTACCTGAGCATGGTCTGTGTGTTCACCTATATCCTCAGTTTTGGGATCGGACCAGCGGGGGTGACTGGAATTCTCCCTACTGAGATTTTTAACCAGGCAGCTCGCCCTGCTGCCTACATGATTGCTGGTTCTCTAATGTGGATTAATCTCTTCATTATTGGAATGCTATTCCCATTCATTGTGAGTGGACTAGGTCAGTTCTGCTTTGTGCCATTTGGTGTTGTCTGTCTTCTCACTGCTGTCTATATTGGACTGGTTTTGCCTGAGACCAAAGGAAAAACACTACCCATGATCACAAGCGAATTCCACAGGCTTAACTTCCACAAAAAAGAGAAGACGGGTCCAAAGTGCAAAGACGTTCATTACCAACTAGGCGAAGTCCACCACTCAACTGCCCTCTAAGctacttatttatatatttggaaTTCCTGTAAACTTATGAATGCTGGAGCGCTCTGTTGAAGAGTAAAAGGTTTACCCAAATATAACCACATAGACACTTTATTGTAAGACCATTTATTcacaaatttaatttgtttttgtcttataggtataaaaatatatagatatgaTATATAGATATCTAACCACAATATCTAACCCTGTTTTTCCTTTATAGTAATTATATGaattagcactttttaaaatctttttaagcTATGTTTTCACTTGTaaattctctcactctctggaTAAAAGCTAGAACAAATAAGGTCTCAACTAGTACAAACATACTGCTGGTGTACTCTTTAATCACAATAAACCATGATGGAAAATA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0008643 carbohydrate transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33168 lncRNA upstream 7775 16073222 ~ 16076550 (+) True G28150
XR_004577052.1 lncRNA upstream 52190 16029134 ~ 16032135 (+) True LOC113533806
XR_003403456.2 lncRNA upstream 52190 16029134 ~ 16032135 (+) False LOC113533806
TU33146 lncRNA upstream 70216 16013347 ~ 16014109 (+) True G28132
XR_004579697.1 lncRNA upstream 123455 15943362 ~ 15960870 (+) True LOC117599231
TU33176 lncRNA downstream 2795 16106043 ~ 16106272 (+) True G28156
TU33180 lncRNA downstream 18729 16121977 ~ 16122332 (+) True G28160
TU33182 lncRNA downstream 19648 16122896 ~ 16123140 (+) True G28162
TU33361 lncRNA downstream 51738 16154986 ~ 16155244 (+) True G28287
TU33449 lncRNA downstream 165461 16268709 ~ 16269552 (+) True G28361
XM_026921783.2 mRNA upstream 13285 16068404 ~ 16071040 (+) True hdhd3
XM_034310846.1 mRNA upstream 13285 16069528 ~ 16071040 (+) False hdhd3
XM_026934989.2 mRNA upstream 17546 16063124 ~ 16066779 (+) True trub2
XM_034300849.1 mRNA upstream 35527 16035454 ~ 16048798 (+) True rab44
XM_026918596.2 mRNA downstream 36235 16139483 ~ 16156080 (+) False sfi1
XM_026918673.2 mRNA downstream 36235 16139483 ~ 16156080 (+) False sfi1
XM_026918283.2 mRNA downstream 36236 16139484 ~ 16156080 (+) True sfi1
XM_026918523.2 mRNA downstream 36236 16139484 ~ 16156080 (+) False sfi1
XM_026918361.2 mRNA downstream 36236 16139484 ~ 16156080 (+) False sfi1
XR_004580083.1 other upstream 789971 15278827 ~ 15294354 (+) False fancd2
trnaf-gaa_15 other upstream 892669 15191584 ~ 15191656 (+) True trnaf-gaa_15
XR_004577012.1 other upstream 2583029 13498298 ~ 13501296 (+) False tshba
XR_004577010.1 other upstream 2584960 13496082 ~ 13499365 (+) False tshba
TU33403 other downstream 78070 16181318 ~ 16182303 (+) False mustn1a
TU34871 other downstream 2671522 18774770 ~ 18826920 (+) False G29569
trnai-aau other downstream 2714154 18817402 ~ 18817475 (+) True trnai-aau
TU35395 other downstream 3431193 19534441 ~ 19537014 (+) False smx5
XR_003403752.1 other downstream 4006882 20110130 ~ 20110225 (+) True LOC113537321

Expression Profile