RNA id: TU33196


Basic Information

Item Value
RNA id TU33196
length 1724
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G28173
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 15615025 ~ 15616748 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttaaacgtaaataaatacataaaaggGTGGTATCGTTGCCATCTCACAGcctactgtctgtgtggagttttgcatgatTGTCCCGTGTCCACAAAGGTTTGAACAATCATGAAAAATCTTGcatgtaggtggactggctacactaaattgcctctaggtgtgaataagtgtgtgaatgtgtgtgtgcaatgtgcCCTGTGaaggactggcatcccattcatgcttcacacccagtgttccctggatagcctctggataataataataataataataataataataataatacaggtACAAATGATGTAGTCTTGAGGGTCACACTTCAGTGAGGAAAGGTATGGTTTAGTACTTTTATTTATGTGACTTTTATTATGTGATATTGTGGTGCTCTGATGAGTAGTCATTAATTAGATCCACTTCCACTCTGACTGGTGATTCCTCTGGTGTCTTTGTTTGGAAAGCATGGAGACTGTCTTTGGTCCTGCAGCAGGTCCTGCACTGCCCTCTGGAGGCTGGAAAGAGTTTCCTCTGTGCTCTTCATCTCCCTCTACTGGAAAATGCTGGATTTATGTGTTTAATCAGAGAGCTGTCACATATGGAGTAAAGCAATTTGTCTGTGTAGAGTACACCGTTAAATTAAAATTGGCACTAAACAGTTGTGCATCATTACAGTGAATCACACAATGTATCATCTATGTATATGGACACACTGCCCTCCACCCTGGCATTAGTCATGATGTTAAATCAGTAATACTAATTTGGTTGTTCTTGATCTCATTTGAAACATTGACCACTAACAGCTACTCCAGATATGAGCACAAACAGCACAATTCCAAATTACCATAAAGTAAATGACTGTATTATCTATGTTATGtgtcaaactttatttttacttacCTTTTAACAATTTTGTGGCGCATTCATTTTTGTTGACTTTGATAAACTGTTTTGATTATGATCAAGGTTCTTGGAGTTTATCGTATTATAAATTGATAATAATCAGGAACGTCTGGTCAGCTATCAGCAGATGGCTTGTTGCCCTGCATTGGATTCTTTGAAAGTGCTCATGAGTAGGAGCTGTTGAACTTGTTGCTAGAGATTAATGACAGATGTATGAAGGCTGCAGTCCATATCACACCATACTGAGGTTTTAATAATCACCATCTGTTTCTTGTGTGTTATATAATTCCTACCATTCCTGTCTCCTCTCCGTATGACCTGAGACTGTGCTGCACAAAAGCTTTGACTTTCTGCTCTTCGTATAATCCTTCTACCTATCCTTTTAGCTAATGCATTGCAGTATTTAAGGCCTAGTCAAATCTTCTATGGTACTTGCACGATTACTGAGGCACTTGGTGCACTCCTGTCCATTACGGACTGTATGTGGACCATGAattctgaaagtttttttttttttttctgtcagtttgAGAACGTATGCTCTAATGGGTGTTTATTGTATGTATGCTTGATTGTATGTATGCTAAGGTAACAGACTTCCTCCTTCTCTAGACACAGCATTCATAAAGCCAAACTTGCGTCTGTCTGTATTAGTGAGTTGTGAATATTGACATACTGTTTTTCGCCCTCCTATTAACCCTTCTGTCTaatgatgctgtttgttcatgAGTGTTTGGATGGTTGATTCCTCCCTGTGTAGGTTAACTGTACACCATGCCACTGTTTGGATGTGAAGAATTCTcaaatccaaaataaaaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32946 lncRNA downstream 110982 15503832 ~ 15504043 (-) True G27953
TU32928 lncRNA downstream 137017 15477790 ~ 15478008 (-) True G27935
TU32925 lncRNA downstream 142478 15472341 ~ 15472547 (-) True G27932
TU32884 lncRNA downstream 230935 15382914 ~ 15384090 (-) True G27904
TU32777 lncRNA downstream 368672 15244315 ~ 15246353 (-) True G27801
TU33208 lncRNA upstream 64822 15681570 ~ 15682044 (-) True G28182
TU33217 lncRNA upstream 104019 15720767 ~ 15725456 (-) True G28191
TU33234 lncRNA upstream 170105 15786853 ~ 15788153 (-) True G28207
TU33280 lncRNA upstream 312293 15929041 ~ 15933858 (-) True G28232
TU33314 lncRNA upstream 419085 16035833 ~ 16045675 (-) True G28256
XM_034314047.1 mRNA downstream 46597 15505644 ~ 15568428 (-) False rad18
XM_034314051.1 mRNA downstream 46597 15505644 ~ 15568428 (-) False rad18
XM_034314053.1 mRNA downstream 46597 15511866 ~ 15568428 (-) True rad18
XM_034314042.1 mRNA downstream 46597 15525560 ~ 15568428 (-) False rad18
XM_034314036.1 mRNA downstream 119816 15462073 ~ 15495209 (-) True oxtr
XM_026919148.2 mRNA upstream 1603 15618351 ~ 15727114 (-) False srgap3
XM_026919138.2 mRNA upstream 1603 15618351 ~ 15727114 (-) True srgap3
XM_026929869.2 mRNA upstream 135465 15752213 ~ 15756341 (-) True cish
XM_026920628.2 mRNA upstream 145788 15762536 ~ 15775878 (-) False LOC113530515
XM_026920619.2 mRNA upstream 145788 15762536 ~ 15775877 (-) True LOC113530515
TU32920 other downstream 145796 15461950 ~ 15469229 (-) False oxtr
TU32916 other downstream 154024 15456635 ~ 15461001 (-) True G27925
TU32819 other downstream 316006 15297309 ~ 15299019 (-) True G27843
XR_003403256.2 other downstream 739035 14872948 ~ 14875990 (-) False pxmp4
TU34409 other upstream 1656207 17272955 ~ 17280173 (-) True G29158
XR_004577384.1 other upstream 1896964 17513712 ~ 17529315 (-) False si:dkey-44g17.6
TU34529 other upstream 2332409 17949157 ~ 17949718 (-) True G29263
TU34546 other upstream 2454239 18070987 ~ 18072909 (-) True G29279
trnae-cuc_6 other upstream 2960476 18577224 ~ 18577295 (-) True trnae-cuc_6

Expression Profile