RNA id: XM_026921753.2


Basic Information

Item Value
RNA id XM_026921753.2
length 3966
RNA type mRNA
GC content 0.50
exon number 19
gene id eif4enif1
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 16125830 ~ 16135715 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AATCCTGGATTGGGCCTTCAGTCAGGACCTGTGGTGATCAGAGGAAAATTGCTGCTGAGCAACTGGAGAGAGaccaaagagagagagggagagaaagagagagagagctcttaTTAACAAAGTGTTATTAGCCCGAGGTGCTTGGAGTGTCCAAGACAAAAGCTATACTTTGGCCTTCTGCCTCAGTCATGGACAAAGATGCCTGTATAGAGGATCAGGAAAATGGCAATAAAATGATCCACACTGTGAAGCCTTCTCTACTGACTTCTGCCTATCGATACACCAAGGAGGAGCTTTTGGAAATCAAAGAGCTACCAATTTCTAACGAGAGGCCAGAATGCCTGTCTCAGAAATATGACAGTGATGGAGTGTGGGATCCTGAAAAATGGCATGCGTCATTGTATCCCTCCGAGTGTGACTTACCAGGAGAGGGTTACAAGAGGGACTATGCTGAGGATAGACCTCCCCTGAAACGTAGAATTGCTGACCCACGAGAGCGTATTAAAGAGGATGATTTGGAGGTCGTTCTTAGCCCCCAGCGCCGTAGTTTTGGAGGTGGCTGTCAAGTGGCACCTGCTGCCCTGACTCGCCGTCCCATCAGCCCCCTTGAGAACAAAGAGAATGAGTCTCTCCGTCTCGGGGGCACACGCCGTATTGGAAGTGGGCGCATCATGGCGGCGCGTGGGTTCGAGAGGGATATTCGGGTGGACAAAGAAAGGGACCGTGAAAGAGAACGTGACTTCAAGGACAAGAGATTCAGGAGGGACTTTGGTGACAAAAGAGTGTTTAGTGAGAGGAGAAGGAATGACTCTTATGCTGAAGAGGAGCCAGAATGGTTTTCTGGTGGACCCACAAGCCAGTCAGAGACCATTGAGCTTATTGGCTTTGACGATAAAGTCCTAGAGGATGATAAACGGAAACCTAAGCGCTCAAGAAAGAGGACAGAGTCTGTAAAAGAAGTTGAGTGCAATGGTGGTCTTTCTGAGGAGGCACAGGTGGTCCAAGAGAGAGGAGCTGATCAGGAGGTTCCTCATCCAGACATTCTACCTGAACAAACAGCTGGGGATTTTGACTTCAACGAGTTCTTTAATCTGGAGAAGACCATGCCTGGCCTGGCTTCGATGATCGAAGATGTGCTTGGTGAAGGGCCAGTCACGGCCAGCCGGTTCAGCCGCTGGTTCAACAGTAATCAGAGTCCCTCTGTTAGCCGCTCCAGCAGCCTGCGCTCCACCCCACACGAAGAGCTTGAGAAACTAGCAGATCCACGCAGTAGTTCTCCTAGTCAGGGTCCTACACCCTATTTCACGCCAATTCCCTTGGAGGAGCGGAGAGAGAAGGTGGACATCTTGGAGCTGCTCCATAAAGCCAAAATTGACCTTAAACCCCTTCTCTCCAGCTTAAATGCAAACAAGGCTCGTCTCAAGGAGAGCACTAACTCTGGGGTGGTGTTGTCATTGGAGGAGGTGGAGAGTGGTTTAAAGGGGCTGAAAGTTCAGAGTGAGCAGCCTCAGCCAGCCCCCAGGCAGCTGCAGGCTCAGGGAAGAGGAACTCCTTTCATGGCCGAGCACCTGGAAGAGGCTCTTACAGGAGGCTCAGGGGTCATGGCCCGTCCCCGTGATCCTGACATGTCTGCATTCAACAAGCTTGTGAGCAGTATGAAGGCAAGTGGAACCCTGCCCACCCAGCCCAAGGCCAGCACGAGCAGCCTGCAGCAGTCTGCAGATCCCGCCATCCTGAGCACCATAACTGAGGCTCAGGTACCTGCCATACAGCAGAAGAATATATTCCAGGAGTTGTTGGGTGTTCAGGGAGCTCCACGGGCAGGTTCTCCACTCTTGAGTGGTCTGTTGGCAAACCCTGAAGCTGCACCTGCTTCAGCCCCTGGCCTCTTGCACCACCGTGGCTCCTCACCGCCTCTCTTTCCACACAGAGGTCCCATTCAGGACTTCTACACTGGCATGCAGACAGGAACAGGCTTCCCTGTTGGCCCACAACAAATTCTGGGGGACCAAATTCCTGAAATGCACAGAGCGTTAAGTCCAGGCCCAACTCCACAACAGTTGAGGGCAATGTCTATGGGAGTGGACCAGGCAGACTTGGAAGCTGGAATGTTCCAGCAGGATCTGGCGTTACACGGTCGCCAGTACCAGCAAGGCTATAACAAACATGGCCATGATAAGTCCTTCCGGAACAGGCAGACGAGGATTAACAGGTCCCCTGGCCCTCATCTGCCGGGCAGAAATTCCCCTGTCACTGCAGTCACTAGTATGctgTCTCCATCTTTTACTCCAACCTCAGTGATTAAAAAGATGTATGAGTCAAAGGAGAAGACTAAAGATGAGCCAGTGAGTAGGCCAGGAAGTAAAGAGGACACAGCAAACTCACAGGAAGACAGTCCTTCCCCCAGCTCCTTCCTTGATGGTGTGGATGGAGGTGGACCTCAAGCAGGTGGTATAAAAGCCTGCTCCACCCCTGTATCTGCCCAGAATCGCCACTCGAAAGAGGCTGAGCGAGCCAGGCCTAGCTCCACCACAGGGCATCACACTCCTTCTATGCTGTCCCCAGGGTCCACTTCCTCTTTCCCCAGACCCATTTACCCAGTACCGCTTTTGTCTCATGTCCCCTTGGTTAGGCCTCCACCACCACAACTGCATCCTGGTGTGGTACAGAGGATGATTGCGCAGGGCATCCAGCCCCAGCAGCTTGGACCTGCACTCTTACAAACAGGACTTTTCCCCCAGACTGTGGATCTGTCCCAGCTGCAGGGTCTGCCTCCTGCTCTCTTAGGCCAGCCTCTCTATCCACTGGGCACTACAGGACACCCACTTATTCCCCCCAGAGCTGCTGGACCACACATGCAGTTAGCAGTCATGCAACAACAGTTCCAACAGCAGCAGAGACCTAatatacacacagtgCCCACTGGAACCCCGCAGTCACAGAGCCACAGCGCGCACCGGACACCCCACTCTCAGCGGCGAGCAGGGAGTCCACCTCTAGGCCTGGCCAAGTGGTTTGGCTCAGATGTGCTGCAGCAACCACTCCCTTCCATGCCTTCTACTAAAGTAATCAGTGTTGATGAACTGGAGTTCCGCCAGTGATGACGATCCTGCAGCCAGTCACAGAGTAAAGCAAGACCTCTCTTCCTCATGGccctgtttaatttaaaaaatgtgaacttTAATTTCTATGAAAATGTACAGGTGATGGAGccctgtgtgttttatatgcTCAGTCATAAACCTTACAGTTGTTGATAGCTGATAGGCCTAGAAGTTAAGAGAAAAGTCCTGGACTACTTTTGTTTTTCCCTGTTGAAGCTGTCCTATCAAATTatttagggattttttttttttgtacttctCTTTGTTTATTTGCAGTAAAGAAGTAAATAATGTATAGGCCAGAATTGTACAGACTATGGgaatttttttcctccctgtacatagcttttttttttttttttgtttgtttgttttttttgttttgctgtgtgGAAGGTTTCAGAGTAAAAAATGGGGCCactgggaattttttttccccctggcTGTAGTGGGGTTCTACATTTTGCAGCCTTGGATTTGGTCTGAGTGGGACTAGGCTGCACTGCTGATGACTGGTTTGTAGAACAAGAGATGCCCATGGGTGTATGAACAATACTTTCCCAACCAATACACCATCTCTCATGGATAAGAGTAGCTGGAACCTGCTGGAGCTGAGCCCAAGTGGGGCTACAGTATGTATGTGCCTTTTTCCCCCCCTACCCTTTCTTCCTTTATGCCCTCTCCCCAGCCTTCACTTCCTTCCCCTAGCCAGTCACTAAGAGAGAAGCACTGCGTTGAATCACGTTTTGTTTTAGGGTGGCAGGGGTTGAATTCAAGGAATTGTgctactaattaaaaaaaaaaaaagcacaataaaataaaatgttcaataaaaaaaaaattcacttttgttttttgttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33349 lncRNA downstream 2881 16122729 ~ 16122949 (-) True G28278
TU33314 lncRNA downstream 80155 16035833 ~ 16045675 (-) True G28256
TU33316 lncRNA downstream 86037 16037983 ~ 16039793 (-) True G28258
TU33280 lncRNA downstream 191972 15929041 ~ 15933858 (-) True G28232
TU33234 lncRNA downstream 337677 15786853 ~ 15788153 (-) True G28207
TU33409 lncRNA upstream 45360 16181075 ~ 16181718 (-) True G28325
TU33415 lncRNA upstream 60859 16196574 ~ 16196867 (-) True G28331
TU33464 lncRNA upstream 123143 16258858 ~ 16259163 (-) True G28376
TU33463 lncRNA upstream 123721 16259436 ~ 16260312 (-) True G28375
TU33471 lncRNA upstream 127899 16263614 ~ 16264242 (-) True G28383
XM_026916183.2 mRNA downstream 5982 16106829 ~ 16119848 (-) False patz1
XM_026916175.2 mRNA downstream 5982 16106829 ~ 16119848 (-) True patz1
XM_026916190.2 mRNA downstream 5983 16106829 ~ 16119847 (-) False patz1
XM_026924815.2 mRNA downstream 42052 16074046 ~ 16083778 (-) False tgfa
XM_026924805.2 mRNA downstream 42054 16074046 ~ 16083776 (-) True tgfa
XM_026931602.2 mRNA upstream 36955 16172670 ~ 16175112 (-) True c2h1orf74
XM_026922252.2 mRNA upstream 46802 16182517 ~ 16187880 (-) True ruvbl1
XM_034311370.1 mRNA upstream 66673 16202388 ~ 16209962 (-) False gata2b
XM_026917189.2 mRNA upstream 66673 16202388 ~ 16209962 (-) True gata2b
XM_026927104.2 mRNA upstream 85450 16221165 ~ 16225200 (-) True si:ch211-157b11.8
TU32920 other downstream 656601 15461950 ~ 15469229 (-) False oxtr
TU32916 other downstream 664829 15456635 ~ 15461001 (-) True G27925
TU32819 other downstream 826811 15297309 ~ 15299019 (-) True G27843
XR_003403256.2 other downstream 1249840 14872948 ~ 14875990 (-) False pxmp4
TU34409 other upstream 1137240 17272955 ~ 17280173 (-) True G29158
XR_004577384.1 other upstream 1377997 17513712 ~ 17529315 (-) False si:dkey-44g17.6
TU34529 other upstream 1813442 17949157 ~ 17949718 (-) True G29263
TU34546 other upstream 1935272 18070987 ~ 18072909 (-) True G29279
trnae-cuc_6 other upstream 2441509 18577224 ~ 18577295 (-) True trnae-cuc_6

Expression Profile