Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU33349 |
| length | 221 |
| lncRNA type | inter_gene |
| GC content | 0.38 |
| exon number | 1 |
| gene id | G28278 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047596.1 |
| NCBI id | CM018542.1 |
| chromosome length | 35203048 |
| location | 16122729 ~ 16122949 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU33314 | lncRNA | downstream | 77054 | 16035833 ~ 16045675 (-) | True | G28256 |
| TU33316 | lncRNA | downstream | 82936 | 16037983 ~ 16039793 (-) | True | G28258 |
| TU33280 | lncRNA | downstream | 188871 | 15929041 ~ 15933858 (-) | True | G28232 |
| TU33234 | lncRNA | downstream | 334576 | 15786853 ~ 15788153 (-) | True | G28207 |
| TU33217 | lncRNA | downstream | 397273 | 15720767 ~ 15725456 (-) | True | G28191 |
| TU33332 | lncRNA | upstream | 2955 | 16125904 ~ 16126299 (-) | False | eif4enif1 |
| TU33333 | lncRNA | upstream | 2977 | 16125926 ~ 16126299 (-) | False | eif4enif1 |
| TU33409 | lncRNA | upstream | 58126 | 16181075 ~ 16181718 (-) | True | G28325 |
| TU33415 | lncRNA | upstream | 73625 | 16196574 ~ 16196867 (-) | True | G28331 |
| TU33464 | lncRNA | upstream | 135909 | 16258858 ~ 16259163 (-) | True | G28376 |
| XM_026916183.2 | mRNA | downstream | 2881 | 16106829 ~ 16119848 (-) | False | patz1 |
| XM_026916175.2 | mRNA | downstream | 2881 | 16106829 ~ 16119848 (-) | True | patz1 |
| XM_026916190.2 | mRNA | downstream | 2882 | 16106829 ~ 16119847 (-) | False | patz1 |
| XM_026924815.2 | mRNA | downstream | 38951 | 16074046 ~ 16083778 (-) | False | tgfa |
| XM_026924805.2 | mRNA | downstream | 38953 | 16074046 ~ 16083776 (-) | True | tgfa |
| XM_026921753.2 | mRNA | upstream | 2881 | 16125830 ~ 16135715 (-) | False | eif4enif1 |
| XM_034297701.1 | mRNA | upstream | 2881 | 16125830 ~ 16135689 (-) | False | eif4enif1 |
| XM_034297700.1 | mRNA | upstream | 2881 | 16125830 ~ 16135689 (-) | False | eif4enif1 |
| XM_034297709.1 | mRNA | upstream | 2881 | 16125830 ~ 16135688 (-) | False | eif4enif1 |
| XM_026921745.2 | mRNA | upstream | 2881 | 16125830 ~ 16135688 (-) | True | eif4enif1 |
| TU32920 | other | downstream | 653500 | 15461950 ~ 15469229 (-) | False | oxtr |
| TU32916 | other | downstream | 661728 | 15456635 ~ 15461001 (-) | True | G27925 |
| TU32819 | other | downstream | 823710 | 15297309 ~ 15299019 (-) | True | G27843 |
| XR_003403256.2 | other | downstream | 1246739 | 14872948 ~ 14875990 (-) | False | pxmp4 |
| TU34409 | other | upstream | 1150006 | 17272955 ~ 17280173 (-) | True | G29158 |
| XR_004577384.1 | other | upstream | 1390763 | 17513712 ~ 17529315 (-) | False | si:dkey-44g17.6 |
| TU34529 | other | upstream | 1826208 | 17949157 ~ 17949718 (-) | True | G29263 |
| TU34546 | other | upstream | 1948038 | 18070987 ~ 18072909 (-) | True | G29279 |
| trnae-cuc_6 | other | upstream | 2454275 | 18577224 ~ 18577295 (-) | True | trnae-cuc_6 |
