Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU33361 |
| length | 223 |
| lncRNA type | intronic |
| GC content | 0.33 |
| exon number | 2 |
| gene id | G28287 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047596.1 |
| NCBI id | CM018542.1 |
| chromosome length | 35203048 |
| location | 16154986 ~ 16155244 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU33182 | lncRNA | upstream | 31846 | 16122896 ~ 16123140 (+) | True | G28162 |
| TU33180 | lncRNA | upstream | 32654 | 16121977 ~ 16122332 (+) | True | G28160 |
| TU33176 | lncRNA | upstream | 48714 | 16106043 ~ 16106272 (+) | True | G28156 |
| TU33170 | lncRNA | upstream | 70018 | 16083289 ~ 16084968 (+) | False | slc2a11a |
| TU33168 | lncRNA | upstream | 78436 | 16073222 ~ 16076550 (+) | True | G28150 |
| TU33449 | lncRNA | downstream | 113465 | 16268709 ~ 16269552 (+) | True | G28361 |
| TU33490 | lncRNA | downstream | 178207 | 16333451 ~ 16334652 (+) | True | G28402 |
| TU33492 | lncRNA | downstream | 180948 | 16336192 ~ 16336694 (+) | True | G28404 |
| TU33493 | lncRNA | downstream | 190401 | 16345645 ~ 16346086 (+) | True | G28405 |
| TU33501 | lncRNA | downstream | 202838 | 16358082 ~ 16361347 (+) | True | G28410 |
| XM_026929453.2 | mRNA | upstream | 51738 | 16083691 ~ 16103248 (+) | False | slc2a11a |
| XM_026929375.2 | mRNA | upstream | 51738 | 16083692 ~ 16103248 (+) | True | slc2a11a |
| XM_034300566.1 | mRNA | upstream | 51738 | 16084325 ~ 16103248 (+) | False | slc2a11a |
| XM_026921783.2 | mRNA | upstream | 83946 | 16068404 ~ 16071040 (+) | True | hdhd3 |
| XM_026925394.2 | mRNA | downstream | 2281 | 16157525 ~ 16166031 (+) | True | zgc:172271 |
| XM_026936003.2 | mRNA | downstream | 11485 | 16166729 ~ 16171224 (+) | True | sirt4 |
| XM_026931590.2 | mRNA | downstream | 19955 | 16175199 ~ 16180134 (+) | True | rft1 |
| XM_026925678.2 | mRNA | downstream | 25927 | 16181171 ~ 16182309 (+) | True | mustn1a |
| XM_026930160.2 | mRNA | downstream | 33091 | 16188335 ~ 16195260 (+) | True | eefsec |
| XR_004580083.1 | other | upstream | 860632 | 15278827 ~ 15294354 (+) | False | fancd2 |
| trnaf-gaa_15 | other | upstream | 963330 | 15191584 ~ 15191656 (+) | True | trnaf-gaa_15 |
| XR_004577012.1 | other | upstream | 2653690 | 13498298 ~ 13501296 (+) | False | tshba |
| XR_004577010.1 | other | upstream | 2655621 | 13496082 ~ 13499365 (+) | False | tshba |
| TU33403 | other | downstream | 26074 | 16181318 ~ 16182303 (+) | False | mustn1a |
| TU34871 | other | downstream | 2619526 | 18774770 ~ 18826920 (+) | False | G29569 |
| trnai-aau | other | downstream | 2662158 | 18817402 ~ 18817475 (+) | True | trnai-aau |
| TU35395 | other | downstream | 3379197 | 19534441 ~ 19537014 (+) | False | smx5 |
| XR_003403752.1 | other | downstream | 3954886 | 20110130 ~ 20110225 (+) | True | LOC113537321 |
