RNA id: TU33464


Basic Information

Item Value
RNA id TU33464
length 306
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G28376
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 16258858 ~ 16259163 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTGGGGTAGTTTATATTTGGGATTTGAGGTGAAGTGTGAGAAGAGGGAATCTACCTAACCTAGCCGCTTACATTAGTACCACACTAACTAATTGTCAGTGGTTATCAGCTTTGTGGTTGTAGGATGTGATTATGTAAAGGCATGATCAAGATAAACTTAGAAAGGTTCAAGATGTTACTTTAAGCAGACGACTAGTTTATCCTCAGCTTCCTTCAAACACTTGGCTGGAGATAACATGTCTAAATCAGTAACAGTTAAGCTGGACTGTGGACAGAGTGAGCACAAAGACTTAATCACTAGAGACA

Function

GO:

id name namespace
GO:0038003 opioid receptor signaling pathway biological_process
GO:0038023 signaling receptor activity molecular_function
GO:0060089 molecular transducer activity molecular_function
GO:0004888 transmembrane signaling receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33415 lncRNA downstream 61991 16196574 ~ 16196867 (-) True G28331
TU33409 lncRNA downstream 77140 16181075 ~ 16181718 (-) True G28325
TU33332 lncRNA downstream 132559 16125904 ~ 16126299 (-) False eif4enif1
TU33333 lncRNA downstream 132559 16125926 ~ 16126299 (-) False eif4enif1
TU33349 lncRNA downstream 135909 16122729 ~ 16122949 (-) True G28278
TU33463 lncRNA upstream 273 16259436 ~ 16260312 (-) True G28375
TU33471 lncRNA upstream 4451 16263614 ~ 16264242 (-) True G28383
TU33472 lncRNA upstream 5761 16264924 ~ 16265160 (-) True G28384
TU33473 lncRNA upstream 7393 16266556 ~ 16266755 (-) True G28385
TU33633 lncRNA upstream 69945 16329108 ~ 16329421 (-) True G28515
XM_026927104.2 mRNA downstream 33658 16221165 ~ 16225200 (-) True si:ch211-157b11.8
XM_034311370.1 mRNA downstream 48896 16202388 ~ 16209962 (-) False gata2b
XM_026917189.2 mRNA downstream 48896 16202388 ~ 16209962 (-) True gata2b
XM_026922252.2 mRNA downstream 70978 16182517 ~ 16187880 (-) True ruvbl1
XM_026931602.2 mRNA downstream 83746 16172670 ~ 16175112 (-) True c2h1orf74
XM_034299722.1 mRNA upstream 12705 16271868 ~ 16281761 (-) True slc26a6l
XM_034300126.1 mRNA upstream 29008 16288171 ~ 16299906 (-) False iho1
XM_034300121.1 mRNA upstream 29008 16288171 ~ 16299905 (-) True iho1
XM_026928839.2 mRNA upstream 29008 16288171 ~ 16296013 (-) False iho1
XM_034300109.1 mRNA upstream 29008 16288171 ~ 16296013 (-) False iho1
TU32920 other downstream 789629 15461950 ~ 15469229 (-) False oxtr
TU32916 other downstream 797857 15456635 ~ 15461001 (-) True G27925
TU32819 other downstream 959839 15297309 ~ 15299019 (-) True G27843
XR_003403256.2 other downstream 1382868 14872948 ~ 14875990 (-) False pxmp4
TU34409 other upstream 1013792 17272955 ~ 17280173 (-) True G29158
XR_004577384.1 other upstream 1254549 17513712 ~ 17529315 (-) False si:dkey-44g17.6
TU34529 other upstream 1689994 17949157 ~ 17949718 (-) True G29263
TU34546 other upstream 1811824 18070987 ~ 18072909 (-) True G29279
trnae-cuc_6 other upstream 2318061 18577224 ~ 18577295 (-) True trnae-cuc_6

Expression Profile