RNA id: TU33472


Basic Information

Item Value
RNA id TU33472
length 237
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G28384
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 16264924 ~ 16265160 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgaaaagagagatcagaggaaaatggccagattggttagagctgccaggaaggatatagtataatcaaataatcatgctttacaactgtggtgagcagaaaacatctcagcatgcacagaacattgaaccttgaggtggatgagctacaacagcagaagaccacattgggttccactcctgtcagccaagaacaggaatctgaggctatcatgggcgcagattcacccaaactggac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33471 lncRNA downstream 682 16263614 ~ 16264242 (-) True G28383
TU33463 lncRNA downstream 4612 16259436 ~ 16260312 (-) True G28375
TU33464 lncRNA downstream 5761 16258858 ~ 16259163 (-) True G28376
TU33415 lncRNA downstream 68057 16196574 ~ 16196867 (-) True G28331
TU33409 lncRNA downstream 83206 16181075 ~ 16181718 (-) True G28325
TU33473 lncRNA upstream 1396 16266556 ~ 16266755 (-) True G28385
TU33633 lncRNA upstream 63948 16329108 ~ 16329421 (-) True G28515
TU33626 lncRNA upstream 92979 16358139 ~ 16359521 (-) True G28508
TU33656 lncRNA upstream 196942 16462102 ~ 16463933 (-) True G28537
TU33657 lncRNA upstream 196942 16462102 ~ 16489915 (-) False G28537
XM_026927104.2 mRNA downstream 39724 16221165 ~ 16225200 (-) True si:ch211-157b11.8
XM_034311370.1 mRNA downstream 54962 16202388 ~ 16209962 (-) False gata2b
XM_026917189.2 mRNA downstream 54962 16202388 ~ 16209962 (-) True gata2b
XM_026922252.2 mRNA downstream 77044 16182517 ~ 16187880 (-) True ruvbl1
XM_026931602.2 mRNA downstream 89812 16172670 ~ 16175112 (-) True c2h1orf74
XM_034299722.1 mRNA upstream 6708 16271868 ~ 16281761 (-) True slc26a6l
XM_034300126.1 mRNA upstream 23011 16288171 ~ 16299906 (-) False iho1
XM_034300121.1 mRNA upstream 23011 16288171 ~ 16299905 (-) True iho1
XM_026928839.2 mRNA upstream 23011 16288171 ~ 16296013 (-) False iho1
XM_034300109.1 mRNA upstream 23011 16288171 ~ 16296013 (-) False iho1
TU32920 other downstream 795695 15461950 ~ 15469229 (-) False oxtr
TU32916 other downstream 803923 15456635 ~ 15461001 (-) True G27925
TU32819 other downstream 965905 15297309 ~ 15299019 (-) True G27843
XR_003403256.2 other downstream 1388934 14872948 ~ 14875990 (-) False pxmp4
TU34409 other upstream 1007795 17272955 ~ 17280173 (-) True G29158
XR_004577384.1 other upstream 1248552 17513712 ~ 17529315 (-) False si:dkey-44g17.6
TU34529 other upstream 1683997 17949157 ~ 17949718 (-) True G29263
TU34546 other upstream 1805827 18070987 ~ 18072909 (-) True G29279
trnae-cuc_6 other upstream 2312064 18577224 ~ 18577295 (-) True trnae-cuc_6

Expression Profile