RNA id: TU33492


Basic Information

Item Value
RNA id TU33492
length 503
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G28404
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 16336192 ~ 16336694 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCTCTGCTGCGCCGTGTCTTCATTCCCTGACGTGCACCAAGCCCTTCATCTTCGTCTCGTACAGGTTTGAACAGGTAGGGTGGGTCAGCTGGCTTGGGCATAGGTGGCAGCCGTCTATGCTTGCTAAAGTGGGCGTGGCAAGTGGTGCATAACAGGACATTGTCACGACCGCCATGATGCCAGTCTTTAGAGCCTGGGAATAGTGTTATAGTCAATTAGTACAAAACTCACCAAAGAGCACATAAATGCTATGTGAATGCTCATCAATTatgtttcatatttattcacGAGTTGTTATCAAAACAACTCTTcagaacaaatatttttcaaggCCATAAAACCCAGACTTTCATTTGCTTGCTGCCTTTTTAACAAGTACTCAGGCAGTAGTTGTAGCTAAAGCCCCATAGCATAAAATCAACTCAATCAAAGAAATAAGCCAAATATAACtttgcatgacatttttattgCCTTTTATTTGTAAGGAAGGCCTTTAACTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33490 lncRNA upstream 1540 16333451 ~ 16334652 (+) True G28402
TU33449 lncRNA upstream 66640 16268709 ~ 16269552 (+) True G28361
TU33361 lncRNA upstream 180948 16154986 ~ 16155244 (+) True G28287
TU33182 lncRNA upstream 213052 16122896 ~ 16123140 (+) True G28162
TU33180 lncRNA upstream 213860 16121977 ~ 16122332 (+) True G28160
TU33493 lncRNA downstream 8951 16345645 ~ 16346086 (+) True G28405
TU33501 lncRNA downstream 21388 16358082 ~ 16361347 (+) True G28410
TU33523 lncRNA downstream 61551 16398245 ~ 16401066 (+) True tomm6
TU33518 lncRNA downstream 61736 16398430 ~ 16401066 (+) False tomm6
TU33519 lncRNA downstream 61736 16398430 ~ 16401066 (+) False tomm6
XM_026915498.2 mRNA upstream 8040 16321000 ~ 16328152 (+) True si:ch211-157b11.14
XM_026915510.2 mRNA upstream 15620 16317108 ~ 16320572 (+) True LOC113527565
XM_026931267.2 mRNA upstream 22948 16306061 ~ 16313244 (+) False c2h1orf159
XM_026924529.2 mRNA downstream 26977 16363671 ~ 16365937 (+) True ppil1
XM_026938484.2 mRNA downstream 54718 16391412 ~ 16394007 (+) True tspo
XM_026938572.2 mRNA downstream 54721 16391415 ~ 16394007 (+) False tspo
XM_026938693.2 mRNA downstream 61715 16398409 ~ 16401099 (+) False tomm6
XM_026943326.2 mRNA downstream 123707 16460401 ~ 16463536 (+) True LOC113544464
TU33403 other upstream 153889 16181318 ~ 16182303 (+) False mustn1a
XR_004580083.1 other upstream 1041838 15278827 ~ 15294354 (+) False fancd2
trnaf-gaa_15 other upstream 1144536 15191584 ~ 15191656 (+) True trnaf-gaa_15
XR_004577012.1 other upstream 2834896 13498298 ~ 13501296 (+) False tshba
XR_004577013.1 other upstream 2836827 13496154 ~ 13499365 (+) False tshba
TU34871 other downstream 2438076 18774770 ~ 18826920 (+) False G29569
trnai-aau other downstream 2480708 18817402 ~ 18817475 (+) True trnai-aau
TU35395 other downstream 3197747 19534441 ~ 19537014 (+) False smx5
XR_003403752.1 other downstream 3773436 20110130 ~ 20110225 (+) True LOC113537321
TU36319 other downstream 4678164 21014858 ~ 21017447 (+) False insl5a

Expression Profile